NeuroML [NeuroML]

attributes

  1. Biophysics_units
  2. Block_conc
  3. Block_eta
  4. Block_gamma
  5. Block_species
  6. CableGroup_CableGroup_cable_id
  7. CableGroup_name
  8. Cable_fractAlongParent
  9. Cable_fract_along_parent
  10. Cable_id
  11. Cable_name
  12. Cable_parent
  13. CellInstance_id
  14. CellInstance_node_id
  15. Cell_name
  16. ChannelML_units
  17. ChannelType_density
  18. ChannelType_name
  19. ClosedState_id
  20. ConcDependence_charge
  21. ConcDependence_ion
  22. ConcDependence_max_conc
  23. ConcDependence_min_conc
  24. ConcDependence_name
  25. ConcDependence_variable_name
  26. ConcFactor_charge
  27. ConcFactor_expr
  28. ConcFactor_ion
  29. ConcFactor_max_conc
  30. ConcFactor_min_conc
  31. ConcFactor_variable_name
  32. Connection_id
  33. Connection_post_cell_id
  34. Connection_post_fraction_along
  35. Connection_post_segment_id
  36. Connection_pre_cell_id
  37. Connection_pre_fraction_along
  38. Connection_pre_segment_id
  39. Connections_size
  40. ConnectivityPattern_ConnectivityPattern_fixed_probability_probability
  41. CurrentVoltageRelation_charge
  42. CurrentVoltageRelation_cond_law
  43. CurrentVoltageRelation_default_erev
  44. CurrentVoltageRelation_default_gmax
  45. CurrentVoltageRelation_fixed_erev
  46. CurrentVoltageRelation_ion
  47. Deprecated_AkdEquation_expr
  48. Deprecated_AkdEquation_type
  49. Deprecated_GenericEquation_expr
  50. Deprecated_HHGate_state
  51. Deprecated_Ion_charge
  52. Deprecated_Ion_default_erev
  53. Deprecated_Ion_name
  54. Deprecated_Ion_role
  55. Deprecated_KSState_name
  56. Deprecated_Ohmic_Deprecated_Ohmic_conductance_default_gmax
  57. Deprecated_Ohmic_ion
  58. Deprecated_Parameter_name
  59. Deprecated_Parameter_value
  60. Deprecated_RateConstantEqn_expr
  61. Deprecated_RateConstantEqn_type
  62. Deprecated_Transition_source
  63. Deprecated_Transition_target
  64. DoubleExponentialSynapse_decay_time
  65. DoubleExponentialSynapse_max_conductance
  66. DoubleExponentialSynapse_reversal_potential
  67. DoubleExponentialSynapse_rise_time
  68. ElectricalSynapse_conductance
  69. FacDep_init_release_prob
  70. FacDep_tau_fac
  71. FacDep_tau_rec
  72. Feature_name
  73. Gate_Gate_state_fraction
  74. Gate_Gate_state_name
  75. Gate_power
  76. GatingComplex_instances
  77. GatingComplex_name
  78. GroupDetail_group
  79. ImplementationPrefs_ImplementationPrefs_table_settings_max_v
  80. ImplementationPrefs_ImplementationPrefs_table_settings_min_v
  81. ImplementationPrefs_ImplementationPrefs_table_settings_table_divisions
  82. InhomogeneousParam_InhomogeneousParam_distal_normalizationEnd
  83. InhomogeneousParam_InhomogeneousParam_proximal_translationStart
  84. InhomogeneousParam_name
  85. InhomogeneousParam_variable
  86. InhomogeneousValue_param_name
  87. InhomogeneousValue_value
  88. Initialisation_value
  89. InputSitePattern_InputSitePattern_percentage_cells_percentage
  90. InputSite_cell_id
  91. InputSite_fraction_along
  92. InputSite_segment_id
  93. InputSites_size
  94. InputTarget_cell_group
  95. InputTarget_population
  96. Input_name
  97. Inputs_units
  98. Instances_size
  99. IntegrateAndFire_g_refrac
  100. IntegrateAndFire_t_refrac
  101. IntegrateAndFire_threshold
  102. IntegrateAndFire_v_reset
  103. IonConcentration_name
  104. IonProperties_name
  105. IonSpecies_name
  106. LocalSynapticProperties_synapse_type
  107. Mechanism_name
  108. Mechanism_passiveConductance
  109. Mechanism_passive_conductance
  110. Mechanism_type
  111. Morphology_lengthUnits
  112. Morphology_length_units
  113. Morphology_name
  114. Morphology_volumeUnits
  115. NO_NAMESPACE_DecayingPoolModel_ceiling
  116. NO_NAMESPACE_DecayingPoolModel_decay_constant
  117. NO_NAMESPACE_DecayingPoolModel_inv_decay_constant
  118. NO_NAMESPACE_DecayingPoolModel_resting_conc
  119. NO_NAMESPACE_GlobalSynapticProperties_synapse_type
  120. NO_NAMESPACE_PoolVolumeInfo_shell_thickness
  121. NO_NAMESPACE_Population_cell_type
  122. NO_NAMESPACE_Projection_source
  123. NO_NAMESPACE_Projection_target
  124. NO_NAMESPACE_Property_tag
  125. NO_NAMESPACE_Property_value
  126. NamedParameter_name
  127. NamedParameter_value
  128. NeuroMLLevel3_lengthUnits
  129. NeuroMLLevel3_length_units
  130. NeuroMLLevel3_name
  131. NeuroMLLevel3_volumeUnits
  132. NonSpatialGrid_x
  133. NonSpatialGrid_y
  134. NonSpatialGrid_z
  135. Offset_value
  136. OpenState_fraction
  137. OpenState_id
  138. Parameter_name
  139. Parameter_value
  140. Path_id
  141. Path_parent
  142. PerCellConnection_direction
  143. PerCellConnection_max_per_target
  144. PerCellConnection_num_per_source
  145. Point3D_x
  146. Point3D_y
  147. Point3D_z
  148. Point_diameter
  149. Point_x
  150. Point_y
  151. Point_z
  152. Points_name
  153. PopulationLocation_reference
  154. Population_name
  155. PotentialSynLoc_synapse_direction
  156. PotentialSynLoc_synapse_type
  157. Projection_name
  158. Projections_units
  159. PropertyDetail_property
  160. PulseInput_amplitude
  161. PulseInput_delay
  162. PulseInput_duration
  163. Q10Settings_experimental_temp
  164. Q10Settings_fixed_q10
  165. Q10Settings_gate
  166. Q10Settings_q10_factor
  167. RandomStimInstance_frequency
  168. RandomStim_frequency
  169. RandomStim_synaptic_mechanism
  170. RectangularBox_RectangularBox_size_depth
  171. RectangularBox_RectangularBox_size_height
  172. RectangularBox_RectangularBox_size_width
  173. RectangularBox_name
  174. SecondDecay_decay_time_2
  175. SecondDecay_max_conductance_2
  176. Segment_cable
  177. Segment_id
  178. Segment_name
  179. Segment_parent
  180. SpatialLayout_SpatialLayout_spacing_x
  181. SpatialLayout_SpatialLayout_spacing_y
  182. SpatialLayout_SpatialLayout_spacing_z
  183. Sphere_name
  184. Spine_length
  185. Spine_parent
  186. Spine_shape
  187. Spine_volume
  188. Status_value
  189. StdpDep_del_weight_ltd
  190. StdpDep_del_weight_ltp
  191. StdpDep_max_syn_weight
  192. StdpDep_post_spike_thresh
  193. StdpDep_tau_ltd
  194. StdpDep_tau_ltp
  195. SteadyState_expr_form
  196. SteadyState_name
  197. SynapseInternalProperties_internal_delay
  198. SynapseInternalProperties_post_delay
  199. SynapseInternalProperties_pre_delay
  200. SynapseInternalProperties_prop_delay
  201. SynapseInternalProperties_threshold
  202. SynapseInternalProperties_weight
  203. SynapseType_name
  204. SynapticLocation_cell_id
  205. SynapticLocation_fraction_along
  206. SynapticLocation_segment_id
  207. ThirdDecay_decay_time_3
  208. ThirdDecay_max_conductance_3
  209. TimeCourse_expr_form
  210. TimeCourse_name
  211. Transition_expr_form
  212. Transition_name
  213. UnnamedParameter_value
  214. VariableNamedParameter_name
  215. VariableParameter_name
  216. from_to_from
  217. from_to_to
  218. generic_expr_params_expr
  219. lengthUnits_ns.org_networkml_schema_NetworkML_lengthUnits
  220. metadata_charge
  221. metadata_default_erev
  222. metadata_name
  223. metadata_role
  224. name_ns.org_networkml_schema_NetworkML_name
  225. standard_expr_params_midpoint
  226. standard_expr_params_rate
  227. standard_expr_params_scale
  228. units_ns.org_networkml_schema_NetworkML_length_units
  229. volumeUnits_ns.org_networkml_schema_NetworkML_volumeUnits

attributeGroups

  1. SecondDecay
  2. ThirdDecay
  3. from_to
  4. generic_expr_params
  5. standard_expr_params

complexTypes

  1. Annotation
  2. Authors
  3. Biophysics
  4. Block
  5. BlockingSynapse
  6. Cable
  7. CableGroup
  8. Cell
  9. CellInstance
  10. Cells
  11. ChannelML
  12. ChannelType
  13. ClosedState
  14. ConcDependence
  15. ConcFactor
  16. Connection
  17. Connections
  18. ConnectivityPattern
  19. CurrentVoltageRelation
  20. DecayingPoolModel
  21. Deprecated_AkdEquation
  22. Deprecated_GenericEquation
  23. Deprecated_HHGate
  24. Deprecated_Ion
  25. Deprecated_KSGate
  26. Deprecated_KSState
  27. Deprecated_Ohmic
  28. Deprecated_Parameter
  29. Deprecated_RateConstVoltConcDep
  30. Deprecated_RateConstantEqn
  31. Deprecated_RateConstantEqnChoice
  32. Deprecated_Transition
  33. Deprecated_VoltageConcGate
  34. Deprecated_VoltageGate
  35. DoubleExponentialSynapse
  36. ElectricalSynapse
  37. FacDep
  38. FacDepSynapse
  39. Feature
  40. FixedPoolInfo
  41. FreePoints
  42. Gate
  43. GatingComplex
  44. GlobalSynapticProperties
  45. GridArrangement
  46. GroupDetail
  47. ImplementationPrefs
  48. InhomogeneousParam
  49. InhomogeneousValue
  50. InitialMembPotential
  51. Initialisation
  52. Input
  53. InputSite
  54. InputSitePattern
  55. InputSites
  56. InputTarget
  57. Inputs
  58. Instances
  59. IntegrateAndFire
  60. IonConcentration
  61. IonProperties
  62. IonSpecies
  63. Level3Biophysics
  64. Level3Cell
  65. Level3Cells
  66. Level3Connectivity
  67. LocalSynapticProperties
  68. Manifold
  69. Mechanism
  70. ModelDBReference
  71. Morphology
  72. MultiDecaySynapse
  73. NamedParameter
  74. NetworkML_ns.org_networkml_schema_NetworkML
  75. NeuroMLLevel3
  76. NeuroMorphoRef
  77. NeuronDBReference
  78. NonSpatialGrid
  79. Offset
  80. OpenState
  81. Parameter
  82. Parameters
  83. Path
  84. PerCellConnection
  85. Person
  86. Point
  87. Point3D
  88. Points
  89. Polygon
  90. Polyhedron
  91. PoolVolumeInfo
  92. Population
  93. PopulationLocation
  94. Populations
  95. PotentialSynLoc
  96. PotentialSynapticLocation
  97. Projection
  98. Projections
  99. Properties
  100. Property
  101. PropertyDetail
  102. Publication
  103. PulseInput
  104. Q10Settings
  105. RandomArrangement
  106. RandomStim
  107. RandomStimInstance
  108. RateAdjustments
  109. RectangularBox
  110. Segment
  111. SpecAxialResistance
  112. SpecCapacitance
  113. Sphere
  114. Spine
  115. Status
  116. StdpDep
  117. StdpSynapse
  118. SteadyState
  119. SynapseInternalProperties
  120. SynapseProperties
  121. SynapseType
  122. SynapticLocation
  123. TimeCourse
  124. Transition
  125. UnnamedParameter
  126. VariableNamedParameter
  127. VariableParameter

elements

  1. Authors_modelAuthor
  2. Authors_modelTranslator
  3. BiophysicsNetworkElements_potentialSynapticLocation
  4. Biophysics_init_memb_potential
  5. Biophysics_initialMembPotential
  6. Biophysics_ionProperties
  7. Biophysics_ion_props
  8. Biophysics_mechanism
  9. Biophysics_spec_axial_resistance
  10. Biophysics_spec_capacitance
  11. Biophysics_specificAxialResistance
  12. Biophysics_specificCapacitance
  13. BlockingSynapse_block
  14. CableGroup_cable
  15. CableGroup_inhomogeneous_param
  16. CellInstance_location
  17. Cell_Cell_cables_cable
  18. Cell_Cell_cables_cablegroup
  19. Cell_Cell_cellBody_polygon
  20. Cell_Cell_cellBody_polyhedron
  21. Cell_Cell_cellBody_sphere
  22. Cell_Cell_segments_segment
  23. Cell_Cell_spines_spine
  24. Cell_cables
  25. Cell_cellBody
  26. Cell_freePoints
  27. Cell_segments
  28. Cell_spines
  29. Cell_status
  30. Cells_cell
  31. ChannelML_channel_type
  32. ChannelML_ion
  33. ChannelML_ion_concentration
  34. ChannelML_synapse_type
  35. ChannelType_current_voltage_relation
  36. ChannelType_hh_gate
  37. ChannelType_impl_prefs
  38. ChannelType_ks_gate
  39. ChannelType_parameters
  40. ChannelType_status
  41. Connection_post
  42. Connection_pre
  43. Connection_properties
  44. Connections_connection
  45. ConnectivityPattern_all_to_all
  46. ConnectivityPattern_fixed_probability
  47. ConnectivityPattern_per_cell_connection
  48. CoreNetworkElements_inputs
  49. CoreNetworkElements_populations
  50. CoreNetworkElements_projections
  51. CurrentVoltageRelation_conc_dependence
  52. CurrentVoltageRelation_conc_factor
  53. CurrentVoltageRelation_gate
  54. CurrentVoltageRelation_integrate_and_fire
  55. CurrentVoltageRelation_offset
  56. CurrentVoltageRelation_ohmic
  57. CurrentVoltageRelation_q10_settings
  58. DecayingPoolModel_ceiling
  59. DecayingPoolModel_decay_constant
  60. DecayingPoolModel_fixed_pool_info
  61. DecayingPoolModel_inv_decay_constant
  62. DecayingPoolModel_pool_volume_info
  63. DecayingPoolModel_resting_conc
  64. Deprecated_AkdEquation_parameter
  65. Deprecated_AlphaBetaFormVoltConcDep_alpha
  66. Deprecated_AlphaBetaFormVoltConcDep_beta
  67. Deprecated_AlphaBetaForm_alpha
  68. Deprecated_AlphaBetaForm_beta
  69. Deprecated_ExtraRateExpressions_gamma
  70. Deprecated_ExtraRateExpressions_zeta
  71. Deprecated_HHGate_transition
  72. Deprecated_KSGate_state
  73. Deprecated_KSGate_transition
  74. Deprecated_Ohmic_Deprecated_Ohmic_conductance_conc_factor
  75. Deprecated_Ohmic_Deprecated_Ohmic_conductance_gate
  76. Deprecated_Ohmic_Deprecated_Ohmic_conductance_rate_adjustments
  77. Deprecated_Ohmic_conductance
  78. Deprecated_RateConstVoltConcDep_generic
  79. Deprecated_RateConstVoltConcDep_generic_equation_hh
  80. Deprecated_RateConstantEqnChoice_generic
  81. Deprecated_RateConstantEqnChoice_generic_equation_hh
  82. Deprecated_RateConstantEqnChoice_parameterised_hh
  83. Deprecated_RateConstantEqn_parameter
  84. Deprecated_Transition_voltage_conc_gate
  85. Deprecated_Transition_voltage_gate
  86. Deprecated_VoltageConcGate_conc_dependence
  87. Deprecated_VoltageConcGate_inf
  88. Deprecated_VoltageConcGate_initialisation
  89. Deprecated_VoltageConcGate_tau
  90. Deprecated_VoltageGate_inf
  91. Deprecated_VoltageGate_initialisation
  92. Deprecated_VoltageGate_tau
  93. FacDepSynapse_plasticity
  94. Feature_freePoints
  95. Feature_manifold
  96. Feature_path
  97. Feature_polygon
  98. Feature_polyhedron
  99. Feature_sphere
  100. FixedPoolInfo_phi
  101. Gate_state
  102. GatingComplex_closed_state
  103. GatingComplex_initialisation
  104. GatingComplex_open_state
  105. GatingComplex_steady_state
  106. GatingComplex_time_course
  107. GatingComplex_transition
  108. GlobalSynapticProperties_default_values
  109. GlobalSynapticProperties_synapse_type
  110. GridArrangement_non_spatial_grid
  111. GroupDetail_description
  112. GroupDetail_properties
  113. ImplementationPrefs_comment
  114. ImplementationPrefs_table_settings
  115. InhomogeneousParam_distal
  116. InhomogeneousParam_metric
  117. InhomogeneousParam_proximal
  118. InitialMembPotential_parameter
  119. InitialMembPotential_variableParameter
  120. InputSitePattern_all_cells
  121. InputSitePattern_percentage_cells
  122. InputSite_pulse_input_instance
  123. InputSite_random_stim_instance
  124. InputSites_site
  125. InputTarget_site_pattern
  126. InputTarget_sites
  127. Input_pulse_input
  128. Input_random_stim
  129. Input_target
  130. Inputs_input
  131. Instances_instance
  132. IonConcentration_decaying_pool_model
  133. IonConcentration_ion_species
  134. IonConcentration_status
  135. IonProperties_parameter
  136. Level3Cell_biophysics
  137. Level3Cell_connectivity
  138. Level3Cells_cell
  139. Level3Connectivity_potential_syn_loc
  140. Mechanism_parameter
  141. Mechanism_variableParameter
  142. Mechanism_variable_parameter
  143. ModelDBReference_comment
  144. ModelDBReference_modelName
  145. ModelDBReference_uri
  146. Morphology_Morphology_features_feature
  147. Morphology_Morphology_groupDetails_groupDetail
  148. Morphology_Morphology_propertyDetails_propertyDetail
  149. Morphology_cells
  150. Morphology_features
  151. Morphology_groupDetails
  152. Morphology_propertyDetails
  153. NamedParameter_group
  154. NeuroMLLevel3_cells
  155. NeuroMLLevel3_channels
  156. NeuroMorphoRef_comment
  157. NeuroMorphoRef_morphologyRef
  158. NeuroMorphoRef_uri
  159. NeuronDBReference_comment
  160. NeuronDBReference_modelName
  161. NeuronDBReference_uri
  162. Parameters_parameter
  163. Person_comment
  164. Person_email
  165. Person_institution
  166. Person_name
  167. Points_point
  168. Polyhedron_Polyhedron_polygons_polygon
  169. Polyhedron_polygons
  170. PoolVolumeInfo_shell_thickness
  171. PopulationLocation_grid_arrangement
  172. PopulationLocation_random_arrangement
  173. Population_cell_type
  174. Population_instances
  175. Population_pop_location
  176. Populations_population
  177. PotentialSynLoc_group
  178. PotentialSynapticLocation_group
  179. PotentialSynapticLocation_synapse_direction
  180. PotentialSynapticLocation_synapse_type
  181. Projection_connections
  182. Projection_connectivity_pattern
  183. Projection_source
  184. Projection_synapse_props
  185. Projection_target
  186. Projections_projection
  187. Properties_property
  188. PropertyDetail_description
  189. PropertyDetail_type
  190. Property_tag
  191. Property_value
  192. Publication_comment
  193. Publication_fullTitle
  194. Publication_pubmedRef
  195. RandomArrangement_population_size
  196. RandomArrangement_rectangular_location
  197. RandomArrangement_spherical_location
  198. RateAdjustments_offset
  199. RateAdjustments_q10_settings
  200. RectangularBox_corner
  201. RectangularBox_size
  202. Segment_distal
  203. Segment_properties
  204. Segment_proximal
  205. SpatialLayout_rectangular_location
  206. SpatialLayout_spacing
  207. SpecAxialResistance_parameter
  208. SpecAxialResistance_variableParameter
  209. SpecAxialResistance_variable_parameter
  210. SpecCapacitance_parameter
  211. SpecCapacitance_variableParameter
  212. SpecCapacitance_variable_parameter
  213. Sphere_center
  214. Spine_distal
  215. Spine_proximal
  216. Status_comment
  217. Status_contributor
  218. Status_issue
  219. StdpSynapse_spike_time_dep
  220. SynapseProperties_default_values
  221. SynapseProperties_synapse_type
  222. SynapseType_blocking_syn
  223. SynapseType_doub_exp_syn
  224. SynapseType_electrical_syn
  225. SynapseType_fac_dep_syn
  226. SynapseType_multi_decay_syn
  227. SynapseType_status
  228. SynapseType_stdp_syn
  229. UnnamedParameter_group
  230. VariableNamedParameter_group
  231. VariableNamedParameter_inhomogeneous_value
  232. VariableParameter_group
  233. VariableParameter_inhomogeneous_value
  234. biophysics_ns.org_biophysics_schema_biophysics
  235. channelml_ns.org_channelml_schema_channelml
  236. metadata_annotation
  237. metadata_group
  238. metadata_notes
  239. metadata_properties
  240. morphml
  241. networkml
  242. neuroml
  243. referencedata_authorList
  244. referencedata_modelDBref
  245. referencedata_neuroMorphoRef
  246. referencedata_neuronDBref
  247. referencedata_publication

elementGroups

  1. BiophysicsNetworkElements
  2. CoreNetworkElements
  3. Deprecated_AlphaBetaForm
  4. Deprecated_AlphaBetaFormVoltConcDep
  5. Deprecated_ExtraRateExpressions
  6. SpatialLayout
  7. metadata
  8. referencedata

schemas

  1. Biophysics_v1.8.1.xsd
  2. ChannelML_v1.8.1.xsd
  3. Metadata_v1.8.1.xsd
  4. MorphML_v1.8.1.xsd
  5. NetworkML_v1.8.1.xsd
  6. NeuroML_Level3_v1.8.1.xsd

simpleTypes

  1. CellIdInNetwork
  2. ConcentrationValue
  3. ConductanceDensityValue
  4. ConductanceLaw
  5. ConductanceValue
  6. CoreEquationType
  7. CurrentValue
  8. Deprecated_CoreEquationType
  9. Deprecated_IonRole
  10. FrequencyValue
  11. Group
  12. InvTimeConstantValue
  13. LengthUnits
  14. LengthValue
  15. MechanismType
  16. Metric
  17. NonNegativeDouble
  18. Notes
  19. Percentage
  20. PositiveDouble
  21. SegmentIdInCell
  22. SpineShape
  23. StatusValue
  24. SynapseDirection
  25. SynapticDelayValue
  26. TemperatureValue
  27. TimeConstantValue
  28. TimeConstantValueIncZero
  29. TimeValue
  30. Units
  31. VoltageValue
  32. VolumeUnits
  33. YesNo
  34. ZeroToOne