Histoimmunogenics Markup Language [HML]

Schema Information

Version
1.0.2
Category
DocumentFormat
Namespace
Description
Histoimmunogenics Markup Language
Publication
2014
Copyright
Copyright (c) National Marrow Donor Program (NMDP). You should have received a copy of the GNU Lesser General Public License along with this specification; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA. http://www.gnu.org/licenses/lgpl.html

attributes

  1. allele-assignment_allele-db
  2. allele-assignment_allele-version
  3. allele-assignment_date
  4. allele_present
  5. amplification_registered-name
  6. center-code_ns.nmdp.org_spec_hml_1.0_sample_center-code
  7. consensus-sequence-block_continuity
  8. consensus-sequence-block_description
  9. consensus-sequence-block_end
  10. consensus-sequence-block_expected-copy-number
  11. consensus-sequence-block_phase-set
  12. consensus-sequence-block_phasing-group
  13. consensus-sequence-block_reference-sequence-id
  14. consensus-sequence-block_start
  15. consensus-sequence-block_strand
  16. consensus-sequence_date
  17. glstring_uri
  18. gssp_primer-sequence
  19. gssp_primer-target
  20. gssp_registered-name
  21. haploid_locus
  22. haploid_method
  23. haploid_type
  24. hml_project-name
  25. hml_version
  26. hmlid_extension
  27. hmlid_root
  28. id_ns.nmdp.org_spec_hml_1.0_sample_id
  29. locus_ns.nmdp.org_spec_hml_1.0_sbt-ngs_locus
  30. locus_ns.nmdp.org_spec_hml_1.0_sbt-sanger_locus
  31. locus_ns.nmdp.org_spec_hml_1.0_sso_locus
  32. locus_ns.nmdp.org_spec_hml_1.0_ssp_locus
  33. property_name
  34. property_value
  35. raw-reads_adapter-trimmed
  36. raw-reads_availability
  37. raw-reads_format
  38. raw-reads_paired
  39. raw-reads_pooled
  40. raw-reads_quality-trimmed
  41. raw-reads_uri
  42. reference-database_availability
  43. reference-database_curated
  44. reference-database_description
  45. reference-database_name
  46. reference-database_reference-database_reference-sequence_accession
  47. reference-database_reference-database_reference-sequence_description
  48. reference-database_reference-database_reference-sequence_end
  49. reference-database_reference-database_reference-sequence_id
  50. reference-database_reference-database_reference-sequence_name
  51. reference-database_reference-database_reference-sequence_start
  52. reference-database_reference-database_reference-sequence_strand
  53. reference-database_reference-database_reference-sequence_uri
  54. reference-database_uri
  55. reference-database_version
  56. reporting-center_reporting-center-context
  57. reporting-center_reporting-center-id
  58. scores_ns.nmdp.org_spec_hml_1.0_sso_scores
  59. scores_ns.nmdp.org_spec_hml_1.0_ssp_scores
  60. sequence-quality_quality-score
  61. sequence-quality_sequence-end
  62. sequence-quality_sequence-start
  63. sub-amplification_registered-name
  64. test-id-source_ns.nmdp.org_spec_hml_1.0_sbt-ngs_test-id-source
  65. test-id-source_ns.nmdp.org_spec_hml_1.0_sbt-sanger_test-id-source
  66. test-id-source_ns.nmdp.org_spec_hml_1.0_sso_test-id-source
  67. test-id-source_ns.nmdp.org_spec_hml_1.0_ssp_test-id-source
  68. test-id_ns.nmdp.org_spec_hml_1.0_sbt-ngs_test-id
  69. test-id_ns.nmdp.org_spec_hml_1.0_sbt-sanger_test-id
  70. test-id_ns.nmdp.org_spec_hml_1.0_sso_test-id
  71. test-id_ns.nmdp.org_spec_hml_1.0_ssp_test-id
  72. typing-test-name_name
  73. typing-test-names_test-id
  74. typing_date
  75. typing_gene-family
  76. variant-effect_hgvs
  77. variant-effect_term
  78. variant-effect_uri
  79. variant_alternate-bases
  80. variant_end
  81. variant_filter
  82. variant_id
  83. variant_name
  84. variant_quality-score
  85. variant_reference-bases
  86. variant_start
  87. variant_uri

complexTypes

  1. allele
  2. allele-list
  3. amplification
  4. consensus-sequence
  5. diploid-combination
  6. gssp
  7. hmlid
  8. locus-block
  9. property
  10. raw-reads
  11. sample_ns.nmdp.org_spec_hml_1.0_sample
  12. sbt-ngs_ns.nmdp.org_spec_hml_1.0_sbt-ngs
  13. sbt-sanger_ns.nmdp.org_spec_hml_1.0_sbt-sanger
  14. sequence
  15. sso_ns.nmdp.org_spec_hml_1.0_sso
  16. ssp_ns.nmdp.org_spec_hml_1.0_ssp
  17. sub-amplification
  18. typing
  19. typing-test-name
  20. typing-test-names

elements

  1. allele-assignment
  2. allele-assignment_property
  3. allele-list_allele
  4. amplification_ns.nmdp.org_spec_hml_1.0_sbt-sanger_amplification
  5. collection-method_ns.nmdp.org_spec_hml_1.0_sample_collection-method
  6. consensus-sequence-block
  7. diploid-combination_locus-block
  8. genotype-list
  9. genotype-list_diploid-combination
  10. glstring
  11. gssp_ns.nmdp.org_spec_hml_1.0_sbt-sanger_gssp
  12. haploid
  13. hml
  14. hml_hmlid
  15. hml_property
  16. hml_typing-test-names
  17. iupac-bases_ns.nmdp.org_spec_hml_1.0_iupac-bases
  18. locus-block_allele-list
  19. property_ns.nmdp.org_spec_hml_1.0_sample_property
  20. property_ns.nmdp.org_spec_hml_1.0_sbt-ngs_property
  21. property_ns.nmdp.org_spec_hml_1.0_sbt-sanger_property
  22. property_ns.nmdp.org_spec_hml_1.0_sso_property
  23. property_ns.nmdp.org_spec_hml_1.0_ssp_property
  24. raw-reads_ns.nmdp.org_spec_hml_1.0_sbt-ngs_raw-reads
  25. reference-database
  26. reference-database_reference-sequence
  27. reporting-center
  28. sample
  29. sbt-ngs
  30. sbt-sanger
  31. sequence-quality
  32. sequence_ns.nmdp.org_spec_hml_1.0_sequence
  33. sso
  34. ssp
  35. sub-amplification_ns.nmdp.org_spec_hml_1.0_sbt-sanger_sub-amplification
  36. typing-method
  37. typing-test-names_typing-test-name
  38. typing_consensus-sequence
  39. typing_ns.nmdp.org_spec_hml_1.0_sample_typing
  40. typing_property
  41. variant
  42. variant-effect

schemas

  1. hml-1.0.2.xsd

simpleTypes

  1. extension
  2. iupac-bases
  3. position-type
  4. present
  5. quality
  6. root
  7. simple-bases