typing

Element Information

Model

property* , allele-assignment* , typing-method , consensus-sequence*
Children: allele-assignment, consensus-sequence, property, typing-method

Attributes

QName Type Fixed Default Use Inheritable Annotation
date xs:date required
gene-family restriction of xs:string required

Source 

<xs:element name="typing" type="hmlns:typing" minOccurs="1" maxOccurs="unbounded"/>

Sample

< sample xmlns = "http://schemas.nmdp.org/spec/hml/1.0" center-code = "123" id = "123000789" >

< collection-method>

buccal swab

</ collection-method>

< typing gene-family = "HLA" date = "2016-03-15" >

< allele-assignment date = "2016-03-16" allele-db = "IMGT/HLA" allele-version = "3.20.0" >

< haploid locus = "HLA-DRB1" method = "DNA" type = "16:02:01" />

< haploid locus = "HLA-DRB1" method = "DNA" type = "04:HTWY" />

< haploid locus = "HLA-DQB1" method = "DNA" type = "03:YGKM" />

< haploid locus = "HLA-DQB1" method = "DNA" type = "03:ZAMW" />

< haploid locus = "HLA-DPB1" method = "DNA" type = "04:02" />

< haploid locus = "HLA-DPB1" method = "DNA" type = "04:FNVS" />

</ allele-assignment>

< typing-method>

< sbt-sanger locus = "HLA-DRB1" >

< amplification registered-name = "L999.K1.V1.DR2V2" >

CACGTTTCCTGTGGCAGCCTAAGAGGGAGTGTCATTTCTTCAATGGGACGGAGCGGGTGC GGTTCCTGGACAGATACTTCTATAACCAGGAGGAGTCCGTGCGCTTCGACAGCGACGTGG GGGAGTACCGGGCGGTGACGGAGCTGGGGCGGCCTGACGCTGAGTACTGGAACAGCCAGA AGGACCTCCTGGAAGACAGGCGCGCCGCGGTGGACACCTACTGCAGACACAACTACGGGG TTGGTGAG

</ amplification>

</ sbt-sanger>

< sbt-sanger locus = "HLA-DRB1" >

< amplification registered-name = "L999.K1.V1.DR4I" >

CACGTTTCTTGGAGCAGGTTAAACATGAGTGTCATTTCTTCAACGGGACGGAGCGGGTGC GGTTCCTGGACAGATACTTCTATCACCAAGAGGAGTACGTGCGCTTCGACAGCGACGTGG GGGAGTACCGGGCGGTGACGGAGCTGGGGCGGCCTGATGCCGAGTACTGGAACAGCCAGA AGGACCTCCTGGAGCAGAGGCGGGCCGAGGTGGACACCTACTGCAGACACAACTACGGGG TTGGTGAGAGCTTCACAGTGCAGCGGCGAG