typing

Encapsulates the primary data from a genotyping method with an 
          optional genotyping result (allele-assignment) determined from the 
          primary data and/or optional consensus sequences.

        Children:
        ---------
        - property:           (optional, qty: 0 or more)
        - allele-assignment:  (not required, qty: 0 or more) Also known as interpretation.
        - typing-method:      (required, qty: 1 or more)
            The 'typing-method' element encapsulates methods such as sso, ssp, 
            sbt-sanger, and sbt-ngs.
        - consensus-sequence: (optional, qty: 0 to many) Consensus data for the 
                               results reported under typing-method.

          Also allows an optional "property" element that may have nested/custom 
          use data related to the interpretation.

        Attributes:
        -----------
        - gene-family:  Represents the gene evaluated in this typing report, e.g. 
                        "HLA" or "KIR" (required)
                        See: http://www.genenames.org/genefamilies for examples.
        - date:         Typing/testing date for this sample (required)

Complex Type Information

Model

Attributes

QName Type Fixed Default Use Inheritable Annotation
date xs:date required
gene-family restriction of xs:string required

Used By

Element sample/typing

Source

<xs:complexType name="typing">
  <xs:annotation>
    <xs:documentation>Encapsulates the primary data from a genotyping method with an optional genotyping result (allele-assignment) determined from the primary data and/or optional consensus sequences. Children: --------- - property: (optional, qty: 0 or more) - allele-assignment: (not required, qty: 0 or more) Also known as interpretation. - typing-method: (required, qty: 1 or more) The 'typing-method' element encapsulates methods such as sso, ssp, sbt-sanger, and sbt-ngs. - consensus-sequence: (optional, qty: 0 to many) Consensus data for the results reported under typing-method. Also allows an optional "property" element that may have nested/custom use data related to the interpretation. Attributes: ----------- - gene-family: Represents the gene evaluated in this typing report, e.g. "HLA" or "KIR" (required) See: http://www.genenames.org/genefamilies for examples. - date: Typing/testing date for this sample (required)</xs:documentation>
  </xs:annotation>
  <xs:sequence>
    <xs:element name="property" type="hmlns:property" minOccurs="0" maxOccurs="unbounded"/>
    <xs:element ref="hmlns:allele-assignment" minOccurs="0" maxOccurs="unbounded"/>
    <xs:element ref="hmlns:typing-method" minOccurs="1" maxOccurs="1"/>
    <xs:element name="consensus-sequence" type="hmlns:consensus-sequence" minOccurs="0" maxOccurs="unbounded"/>
  </xs:sequence>
  <xs:attribute name="gene-family" use="required">
    <xs:simpleType>
      <xs:restriction base="xs:string">
        <xs:minLength value="1"/>
      </xs:restriction>
    </xs:simpleType>
  </xs:attribute>
  <xs:attribute type="xs:date" name="date" use="required"/>
</xs:complexType>