raw-reads 

Reports the raw sequence reads generated by an NGS platform. Because 
        various platforms report reads in various formats, the platform must be
        specified. Since this data is quite large even for relatively small
        regions of the genome, this information must be linked to using an 
        external URI.

        Attributes:
        -----------
        - uri: An external link to the raw reads. (required)
        - format: Identifies the format of the data located at the URI. (required)
        - paired: true/false (default) (required)
        - pooled: true/false (default) (required)
        - availability: public|private|permission (optional)
        - adapter-trimmed: true/false (default) (required)
        - quality-trimmed: true/false (default) (required)

Complex Type Information

Model

Attributes

QName Type Fixed Default Use Inheritable Annotation
adapter-trimmed xs:boolean required
availability restriction of xs:string optional
format restriction of xs:string required
paired xs:boolean required
pooled xs:boolean required
quality-trimmed xs:boolean required
uri restriction of xs:anyURI required

Used By

Element sbt-ngs/raw-reads

Source 

<xs:complexType name="raw-reads">
  <xs:annotation>
    <xs:documentation>Reports the raw sequence reads generated by an NGS platform. Because various platforms report reads in various formats, the platform must be specified. Since this data is quite large even for relatively small regions of the genome, this information must be linked to using an external URI. Attributes: ----------- - uri: An external link to the raw reads. (required) - format: Identifies the format of the data located at the URI. (required) - paired: true/false (default) (required) - pooled: true/false (default) (required) - availability: public|private|permission (optional) - adapter-trimmed: true/false (default) (required) - quality-trimmed: true/false (default) (required)</xs:documentation>
  </xs:annotation>
  <xs:attribute name="uri" use="required">
    <xs:simpleType>
      <xs:restriction base="xs:anyURI">
        <xs:minLength value="5"/>
      </xs:restriction>
    </xs:simpleType>
  </xs:attribute>
  <xs:attribute name="format" use="required">
    <xs:simpleType>
      <xs:restriction base="xs:string">
        <xs:minLength value="1"/>
      </xs:restriction>
    </xs:simpleType>
  </xs:attribute>
  <xs:attribute name="paired" type="xs:boolean" use="required"/>
  <xs:attribute name="pooled" type="xs:boolean" use="required"/>
  <xs:attribute name="availability" use="optional">
    <xs:simpleType>
      <xs:restriction base="xs:string">
        <xs:enumeration value="public"/>
        <xs:enumeration value="private"/>
        <xs:enumeration value="permission"/>
      </xs:restriction>
    </xs:simpleType>
  </xs:attribute>
  <xs:attribute name="adapter-trimmed" type="xs:boolean" use="required"/>
  <xs:attribute name="quality-trimmed" type="xs:boolean" use="required"/>
</xs:complexType>