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  • Back to Schema
  • Overview

sequence

Element Information

Model

Attributes

Used By

Element consensus-sequence-block

Source

<xs:element name="sequence" type="hmlns:sequence"/>

Sample

< consensus-sequence-block xmlns = "http://schemas.nmdp.org/spec/hml/1.0" reference-sequence-id = "ref1" start = "29942124" end = "29944020" strand = "1" phase-set = "1" continuity = "true" expected-copy-number = "1" description = "HLA-A exon 1" >

< sequence>

TTTCTTGGAGCAGGTTAAACATGAGTGTCATTTCTTCAACGGGACGGAGCGGGTGCGGTTCCTGGACA GATACTTCTATCACCAAGAGGAGTACGTGCGCTTCGACAGCGACGTGGGGGAGTACCGGGCGGTGACG GAGCTGGGGCGGCCTAGCGCCGAGTACTGGAACAGCCAGAAGGACCTCCTGGAGCAGAGGCGGGCCGA GGTGGACACCTACTGCAGACACAACTACGGGGTTGTGGAGAGCTTCACA

</ sequence>

< variant reference-bases = "T" alternate-bases = "C" start = "29942937" end = "29943001" >

< variant-effect term = "missense_variant" />

</ variant>

< variant reference-bases = "CG" alternate-bases = "C" start = "29942999" end = "29943025" >

< variant-effect term = "frameshift_variant" />

</ variant>

< variant reference-bases = "A" alternate-bases = "AT" start = "29942760" end = "29942852" >

< variant-effect term = "stop_gained" />

</ variant>

< sequence-quality sequence-start = "29942937" sequence-end = "29943001" quality-score = "1.0" />

< sequence-quality sequence-start = "29942955" sequence-end = "29943020" quality-score = "1.0" />

</ consensus-sequence-block>

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