PDBx:entity_polyType

Data items in the ENTITY_POLY category record details about the
polymer, such as the type of the polymer, the number of
monomers and whether it has nonstandard features.

    Example 1 - based on PDB entry 5HVP and laboratory records for the
                structure corresponding to PDB entry 5HVP.
<PDBx:entity_polyCategory>
   <PDBx:entity_poly entity_id="1">
      <PDBx:nstd_chirality>no</PDBx:nstd_chirality>
      <PDBx:nstd_linkage>no</PDBx:nstd_linkage>
      <PDBx:nstd_monomer>no</PDBx:nstd_monomer>
      <PDBx:type>polypeptide(L)</PDBx:type>
      <PDBx:type_details xsi:nil="true" />
   </PDBx:entity_poly>
</PDBx:entity_polyCategory>

Complex Type Information

Model

Used By

Source

<xsd:complexType name="entity_polyType">
  <xsd:annotation>
    <xsd:documentation xml:lang="en">Data items in the ENTITY_POLY category record details about the polymer, such as the type of the polymer, the number of monomers and whether it has nonstandard features. Example 1 - based on PDB entry 5HVP and laboratory records for the structure corresponding to PDB entry 5HVP. <PDBx:entity_polyCategory> <PDBx:entity_poly entity_id="1"> <PDBx:nstd_chirality>no</PDBx:nstd_chirality> <PDBx:nstd_linkage>no</PDBx:nstd_linkage> <PDBx:nstd_monomer>no</PDBx:nstd_monomer> <PDBx:type>polypeptide(L)</PDBx:type> <PDBx:type_details xsi:nil="true" /> </PDBx:entity_poly> </PDBx:entity_polyCategory></xsd:documentation>
  </xsd:annotation>
  <xsd:sequence>
    <xsd:element name="entity_poly" minOccurs="0" maxOccurs="unbounded">
      <xsd:complexType>
        <xsd:all>
          <xsd:element name="nstd_chirality" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A flag to indicate whether the polymer contains at least one monomer unit with chirality different from that specified in attribute type in category entity_poly.</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:string">
                <xsd:enumeration value="no"/>
                <xsd:enumeration value="n"/>
                <xsd:enumeration value="yes"/>
                <xsd:enumeration value="y"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
          <xsd:element name="nstd_linkage" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A flag to indicate whether the polymer contains at least one monomer-to-monomer link different from that implied by attribute type in category entity_poly.</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:string">
                <xsd:enumeration value="no"/>
                <xsd:enumeration value="n"/>
                <xsd:enumeration value="yes"/>
                <xsd:enumeration value="y"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
          <xsd:element name="nstd_monomer" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A flag to indicate whether the polymer contains at least one monomer that is not considered standard.</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:string">
                <xsd:enumeration value="no"/>
                <xsd:enumeration value="n"/>
                <xsd:enumeration value="yes"/>
                <xsd:enumeration value="y"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
          <xsd:element name="number_of_monomers" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The number of monomers in the polymer.</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:integer">
                <xsd:minInclusive value="1"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
          <xsd:element name="pdbx_seq_one_letter_code" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Chemical sequence expressed as string of one-letter amino acid codes. Modifications and non-standard amino acids are coded as X. A for alanine or adenine B for ambiguous asparagine/aspartic-acid R for arginine N for asparagine D for aspartic-acid C for cysteine or cystine or cytosine Q for glutamine E for glutamic-acid Z for ambiguous glutamine/glutamic acid G for glycine or guanine H for histidine I for isoleucine L for leucine K for lysine M for methionine F for phenylalanine P for proline S for serine T for threonine or thymine W for tryptophan Y for tyrosine V for valine U for uracil O for water X for other</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_seq_one_letter_code_can" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Cannonical chemical sequence expressed as string of one-letter amino acid codes. Modifications are coded as the parent amino acid where possible. A for alanine or adenine B for ambiguous asparagine/aspartic-acid R for arginine N for asparagine D for aspartic-acid C for cysteine or cystine or cytosine Q for glutamine E for glutamic-acid Z for ambiguous glutamine/glutamic acid G for glycine or guanine H for histidine I for isoleucine L for leucine K for lysine M for methionine F for phenylalanine P for proline S for serine T for threonine or thymine W for tryptophan Y for tyrosine V for valine U for uracil MSHHWGYGKHNGPEHWHKDFPIAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQATSLRILNNGAAFNVEFD</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_seq_one_letter_code_sample" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">For cases in which the sample and model sequence differ this item contains the sample chemical sequence expressed as string of one-letter amino acid codes. Modified may be include as 'X' or with their 3-letter codes in parentheses. A for alanine or adenine B for ambiguous asparagine/aspartic-acid R for arginine N for asparagine D for aspartic-acid C for cysteine or cystine or cytosine Q for glutamine E for glutamic-acid Z for ambiguous glutamine/glutamic acid G for glycine or guanine H for histidine I for isoleucine L for leucine K for lysine M for methionine F for phenylalanine P for proline S for serine T for threonine or thymine W for tryptophan Y for tyrosine V for valine U for uracil O for water X for other</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_strand_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The PDB strand/chain id(s) corresponding to this polymer entity. A B A,B,C</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_target_identifier" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">For Structural Genomics entries, the sequence's target identifier registered at the TargetTrack database. 356560</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="type" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The type of the polymer.</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:string">
                <xsd:enumeration value="polypeptide(D)"/>
                <xsd:enumeration value="polypeptide(L)"/>
                <xsd:enumeration value="polydeoxyribonucleotide"/>
                <xsd:enumeration value="polyribonucleotide"/>
                <xsd:enumeration value="polysaccharide(D)"/>
                <xsd:enumeration value="polysaccharide(L)"/>
                <xsd:enumeration value="polydeoxyribonucleotide/polyribonucleotide hybrid"/>
                <xsd:enumeration value="cyclic-pseudo-peptide"/>
                <xsd:enumeration value="peptide nucleic acid"/>
                <xsd:enumeration value="other"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
          <xsd:element name="type_details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A description of special aspects of the polymer type. monomer Ala 16 is a D-amino acid the oligomer contains alternating RNA and DNA units</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
        </xsd:all>
        <xsd:attribute name="entity_id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category entity in the ENTITY category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:complexType>
    </xsd:element>
  </xsd:sequence>
</xsd:complexType>