Biological Dynamics Markup Language [BDML]

Schema Information

Version
0.2
Category
DocumentFormat
Namespace
Description
Biological Dynamics Markup Language is an XML format for quantitative data describing biological dynamics.
Publication
2014
Copyright
© The Author 2014. Published by Oxford University Press

attributes

  1. BDBase_metaid
  2. Feature_Feature_featureUnit_ontologyRef
  3. Object_Object_objectName_ontologyRef
  4. ScaleUnit_ScaleUnit_tUnit_ontologyRef
  5. ScaleUnit_ScaleUnit_xyzUnit_ontologyRef
  6. Summary_Summary_datatype_ontologyRef
  7. Summary_Summary_organism_ontologyRef
  8. bdmlDocument_version

complexTypes

  1. BDBase
  2. Circle
  3. Component
  4. Contact
  5. Data
  6. Face
  7. Feature
  8. Info
  9. Line
  10. Measurement
  11. Methods
  12. Object
  13. Ontology
  14. OntologyTerm
  15. Point
  16. Property
  17. ScaleUnit
  18. Series
  19. Set
  20. Sphere
  21. Summary
  22. XYZ
  23. XYZSequence
  24. XYZTriplet
  25. bdmlDocument

elements

  1. BDBase_annotation
  2. BDBase_notes
  3. Circle_radius
  4. Circle_xyz
  5. Component_componentID
  6. Component_componentName
  7. Component_measurement
  8. Component_prevID
  9. Component_time
  10. Contact_E-mail
  11. Contact_URL
  12. Contact_address
  13. Contact_department
  14. Contact_laboratory
  15. Contact_name
  16. Contact_organization
  17. Contact_phone
  18. Data_component
  19. Data_feature
  20. Data_object
  21. Data_scaleUnit
  22. Face_xyzTriplet
  23. Feature_featureName
  24. Feature_featureScale
  25. Feature_featureUnit
  26. Info_bdmlID
  27. Info_license
  28. Info_release
  29. Info_title
  30. Line_xyzSequence
  31. Measurement_circle
  32. Measurement_face
  33. Measurement_line
  34. Measurement_objectRef
  35. Measurement_point
  36. Measurement_property
  37. Measurement_sphere
  38. Methods_protocol
  39. Methods_source
  40. Methods_summary
  41. Object_objectName
  42. OntologyTerm_id
  43. OntologyTerm_ontologyID
  44. OntologyTerm_ontologyURI
  45. OntologyTerm_term
  46. Ontology_ontologyTerm
  47. Point_xyz
  48. Property_featureRef
  49. Property_featureVal
  50. ScaleUnit_tScale
  51. ScaleUnit_tUnit
  52. ScaleUnit_xScale
  53. ScaleUnit_xyzUnit
  54. ScaleUnit_yScale
  55. ScaleUnit_zScale
  56. Series_bdmlIDRef
  57. Set_bdmlIDRef
  58. Sphere_radius
  59. Sphere_xyz
  60. Summary_PMID
  61. Summary_basedon
  62. Summary_citation
  63. Summary_contributors
  64. Summary_datatype
  65. Summary_dblink
  66. Summary_description
  67. Summary_localID
  68. Summary_organism
  69. XYZSequence_xyz
  70. XYZTriplet_xyz
  71. XYZ_x
  72. XYZ_y
  73. XYZ_z
  74. bdml
  75. bdmlDocument_contact
  76. bdmlDocument_data
  77. bdmlDocument_info
  78. bdmlDocument_methods
  79. bdmlDocument_ontology
  80. bdmlDocument_series
  81. bdmlDocument_set
  82. bdmlDocument_summary

schemas

  1. bdml0.2.xsd

simpleTypes

  1. BasedOn
  2. UUIDType
  3. UnitKind
  4. tUnitKind