phyloXML [phyloXML]

Schema Information

Version
1.20
Category
DocumentFormatMetadataStandard
Namespace
Description
an XML language for the analysis, exchange, and storage of phylogenetic trees (or networks) and associated data.
Publication
2009
Copyright
Copyright (c) 2008-2016 Christian Zmasek

attributes

  1. Accession_comment
  2. Accession_source
  3. Annotation_evidence
  4. Annotation_ref
  5. Annotation_source
  6. Annotation_type
  7. BinaryCharacters_absent_count
  8. BinaryCharacters_gained_count
  9. BinaryCharacters_lost_count
  10. BinaryCharacters_present_count
  11. BinaryCharacters_type
  12. CladeRelation_distance
  13. CladeRelation_id_ref_0
  14. CladeRelation_id_ref_1
  15. CladeRelation_type
  16. Clade_collapse
  17. Clade_id_source
  18. Confidence_stddev
  19. Confidence_type
  20. Date_unit
  21. DomainArchitecture_length
  22. Id_provider
  23. MolSeq_is_aligned
  24. NO_NAMESPACE_Clade_branch_length
  25. Phylogeny_branch_length_unit
  26. Phylogeny_rerootable
  27. Phylogeny_rooted
  28. Phylogeny_type
  29. Point_alt_unit
  30. Point_geodetic_datum
  31. Property_applies_to
  32. Property_datatype
  33. Property_id_ref
  34. Property_ref
  35. Property_unit
  36. ProteinDomain_confidence
  37. ProteinDomain_from
  38. ProteinDomain_id
  39. ProteinDomain_to
  40. Reference_doi
  41. SequenceRelation_distance
  42. SequenceRelation_id_ref_0
  43. SequenceRelation_id_ref_1
  44. SequenceRelation_type
  45. Sequence_id_ref
  46. Sequence_id_source
  47. Sequence_type
  48. Taxonomy_id_source
  49. Uri_desc
  50. Uri_type

complexTypes

  1. Accession
  2. Annotation
  3. BinaryCharacterList
  4. BinaryCharacters
  5. BranchColor
  6. Clade
  7. CladeRelation
  8. Confidence
  9. CrossReferences
  10. Date
  11. Distribution
  12. DomainArchitecture
  13. Events
  14. Id
  15. MolSeq
  16. Phylogeny
  17. Phyloxml_ns.phyloxml.org_Phyloxml
  18. Point
  19. Polygon
  20. Property
  21. ProteinDomain
  22. Reference
  23. Sequence
  24. SequenceRelation
  25. Taxonomy
  26. Uri

elements

  1. Annotation_confidence
  2. Annotation_desc
  3. Annotation_property
  4. Annotation_uri
  5. BinaryCharacterList_bc
  6. BinaryCharacters_absent
  7. BinaryCharacters_gained
  8. BinaryCharacters_lost
  9. BinaryCharacters_present
  10. BranchColor_alpha
  11. BranchColor_blue
  12. BranchColor_green
  13. BranchColor_red
  14. CladeRelation_confidence
  15. Clade_binary_characters
  16. Clade_branch_length
  17. Clade_clade
  18. Clade_color
  19. Clade_confidence
  20. Clade_date
  21. Clade_distribution
  22. Clade_events
  23. Clade_name
  24. Clade_property
  25. Clade_reference
  26. Clade_sequence
  27. Clade_taxonomy
  28. Clade_width
  29. CrossReferences_accession
  30. Date_desc
  31. Date_maximum
  32. Date_minimum
  33. Date_value
  34. Distribution_desc
  35. Distribution_point
  36. Distribution_polygon
  37. DomainArchitecture_domain
  38. Events_confidence
  39. Events_duplications
  40. Events_losses
  41. Events_speciations
  42. Events_type
  43. Phylogeny_clade
  44. Phylogeny_clade_relation
  45. Phylogeny_confidence
  46. Phylogeny_date
  47. Phylogeny_description
  48. Phylogeny_id
  49. Phylogeny_name
  50. Phylogeny_property
  51. Phylogeny_sequence_relation
  52. Point_alt
  53. Point_lat
  54. Point_long
  55. Polygon_point
  56. Reference_desc
  57. SequenceRelation_confidence
  58. Sequence_accession
  59. Sequence_annotation
  60. Sequence_cross_references
  61. Sequence_domain_architecture
  62. Sequence_gene_name
  63. Sequence_location
  64. Sequence_mol_seq
  65. Sequence_name
  66. Sequence_symbol
  67. Sequence_uri
  68. Taxonomy_authority
  69. Taxonomy_code
  70. Taxonomy_common_name
  71. Taxonomy_id
  72. Taxonomy_rank
  73. Taxonomy_scientific_name
  74. Taxonomy_synonym
  75. Taxonomy_uri
  76. phylogeny_ns.phyloxml.org_Phyloxml_phylogeny
  77. phyloxml

schemas

  1. phyloxml.xsd

simpleTypes

  1. AppliesTo
  2. EventType
  3. PropertyDataType
  4. Rank
  5. SequenceRelationType
  6. SequenceSymbol
  7. SequenceType
  8. TaxonomyCode
  9. id_ref
  10. id_source
  11. ref