Systems Biology Markup Language [SBML]

Schema Information

Version
5
Category
DocumentFormat
Namespace
Description
Systems Biology Markup Language for models of biological processes
Publication
2015-08-04
Copyright
* Copyright 2007-2015 California Institute of Technology. * Copyright 2003-2006 California Institute of Technology, the Japan Science * and Technology Corporation, and the University of Hertfordshire. * * This software is licensed according to the terms described in the file * named "LICENSE.txt" included with this distribution and available * online at http://sbml.org/xml-schemas/LICENSE.txt

attributes

  1. AssignmentRule_variable
  2. Browser-interface.attrib_altimg
  3. Browser-interface.attrib_alttext
  4. Browser-interface.attrib_baseline
  5. Browser-interface.attrib_height
  6. Browser-interface.attrib_name
  7. Browser-interface.attrib_overflow
  8. Browser-interface.attrib_type
  9. Browser-interface.attrib_width
  10. Common.attrib_class
  11. Common.attrib_id
  12. Common.attrib_style
  13. Common.attrib_xref
  14. CompartmentType_id
  15. CompartmentType_name
  16. Compartment_compartmentType
  17. Compartment_constant
  18. Compartment_id
  19. Compartment_name
  20. Compartment_outside
  21. Compartment_size
  22. Compartment_spatialDimensions
  23. Compartment_units
  24. Definition.attrib_definitionURL
  25. Definition.attrib_encoding
  26. EventAssignment_variable
  27. Event_id
  28. Event_name
  29. Event_useValuesFromTriggerTime
  30. FunctionDefinition_id
  31. FunctionDefinition_name
  32. InitialAssignment_symbol
  33. Model_id
  34. Model_name
  35. Operator.attrib_accent
  36. Operator.attrib_fence
  37. Operator.attrib_form
  38. Operator.attrib_largeop
  39. Operator.attrib_lspace
  40. Operator.attrib_maxsize
  41. Operator.attrib_minsize
  42. Operator.attrib_movablelimits
  43. Operator.attrib_rspace
  44. Operator.attrib_separator
  45. Operator.attrib_stretchy
  46. Operator.attrib_symmetric
  47. Parameter_constant
  48. Parameter_id
  49. Parameter_name
  50. Parameter_units
  51. Parameter_value
  52. RateRule_variable
  53. Reaction_fast
  54. Reaction_id
  55. Reaction_name
  56. Reaction_reversible
  57. SBase_metaid
  58. SBase_sboTerm
  59. Sbml_level
  60. Sbml_version
  61. SimpleSpeciesReference_id
  62. SimpleSpeciesReference_name
  63. SimpleSpeciesReference_species
  64. SpeciesReference_stoichiometry
  65. SpeciesType_id
  66. SpeciesType_name
  67. Species_boundaryCondition
  68. Species_charge
  69. Species_compartment
  70. Species_constant
  71. Species_hasOnlySubstanceUnits
  72. Species_id
  73. Species_initialAmount
  74. Species_initialConcentration
  75. Species_name
  76. Species_speciesType
  77. Species_substanceUnits
  78. Table-alignment.attrib_columnalign
  79. Table-alignment.attrib_groupalign
  80. Table-alignment.attrib_rowalign
  81. Token-style.attrib_mathbackground
  82. Token-style.attrib_mathcolor
  83. Token-style.attrib_mathsize
  84. Token-style.attrib_mathvariant
  85. UnitDefinition_id
  86. UnitDefinition_name
  87. Unit_exponent
  88. Unit_kind
  89. Unit_multiplier
  90. Unit_scale
  91. annotation-xml.attlist_encoding
  92. annotation.attlist_encoding
  93. ci.attlist_type
  94. cn.attlist_base
  95. cn.attlist_type
  96. declare.attlist_nargs
  97. declare.attlist_occurrence
  98. declare.attlist_scope
  99. declare.attlist_type
  100. href
  101. interval.attlist_closure
  102. list.attlist_order
  103. maction.attlist_actiontype
  104. maction.attlist_selection
  105. maligngroup.attlist_groupalign
  106. malignmark.attlist_edge
  107. math.attlist_display
  108. math.attlist_macros
  109. menclose.attlist_notation
  110. mfenced.attlist_close
  111. mfenced.attlist_open
  112. mfenced.attlist_separators
  113. mfrac.attlist_bevelled
  114. mfrac.attlist_denomalign
  115. mfrac.attlist_linethickness
  116. mfrac.attlist_numalign
  117. mglyph.attlist_alt
  118. mglyph.attlist_fontfamily
  119. mglyph.attlist_index
  120. mover.attlist_accent
  121. mpadded.attlist_depth
  122. mpadded.attlist_height
  123. mpadded.attlist_lspace
  124. mpadded.attlist_width
  125. ms.attlist_lquote
  126. ms.attlist_rquote
  127. mspace.attlist_depth
  128. mspace.attlist_height
  129. mspace.attlist_linebreak
  130. mspace.attlist_width
  131. mstyle.attlist_background
  132. mstyle.attlist_color
  133. mstyle.attlist_displaystyle
  134. mstyle.attlist_linethickness
  135. mstyle.attlist_mediummathspace
  136. mstyle.attlist_scriptlevel
  137. mstyle.attlist_scriptminsize
  138. mstyle.attlist_scriptsizemultiplier
  139. mstyle.attlist_thickmathspace
  140. mstyle.attlist_thinmathspace
  141. mstyle.attlist_verythickmathspace
  142. mstyle.attlist_verythinmathspace
  143. mstyle.attlist_veryverythickmathspace
  144. mstyle.attlist_veryverythinmathspace
  145. msub.attlist_subscriptshift
  146. msubsup.attlist_subscriptshift
  147. msubsup.attlist_superscriptshift
  148. msup.attlist_superscriptshift
  149. mtable.attlist_align
  150. mtable.attlist_alignmentscope
  151. mtable.attlist_columnlines
  152. mtable.attlist_columnspacing
  153. mtable.attlist_columnwidth
  154. mtable.attlist_displaystyle
  155. mtable.attlist_equalcolumns
  156. mtable.attlist_equalrows
  157. mtable.attlist_frame
  158. mtable.attlist_framespacing
  159. mtable.attlist_minlabelspacing
  160. mtable.attlist_rowlines
  161. mtable.attlist_rowspacing
  162. mtable.attlist_side
  163. mtable.attlist_width
  164. mtd.attlist_columnspan
  165. mtd.attlist_rowspan
  166. munder.attlist_accentunder
  167. munderover.attlist_accent
  168. munderover.attlist_accentunder
  169. semantics.attlist_definitionURL
  170. semantics.attlist_encoding
  171. set.attlist_type
  172. tendsto.attlist_type

attributeGroups

  1. Browser-interface.attrib
  2. Common.attrib
  3. Definition.attrib
  4. Operator.attrib
  5. Table-alignment.attrib
  6. Token-style.attrib
  7. annotation-xml.attlist
  8. annotation.attlist
  9. apply.attlist
  10. bvar.attlist
  11. card.attlist
  12. cartesianproduct.attlist
  13. ci.attlist
  14. cn.attlist
  15. condition.attlist
  16. csymbol.attlist
  17. curl.attlist
  18. declare.attlist
  19. degree.attlist
  20. determinant.attlist
  21. diff.attlist
  22. divergence.attlist
  23. grad.attlist
  24. in.attlist
  25. int.attlist
  26. intersect.attlist
  27. interval.attlist
  28. inverse.attlist
  29. lambda.attlist
  30. laplacian.attlist
  31. limit.attlist
  32. list.attlist
  33. lowlimit.attlist
  34. maction.attlist
  35. maligngroup.attlist
  36. malignmark.attlist
  37. math.attlist
  38. matrix.attlist
  39. matrixrow.attlist
  40. mean.attlist
  41. median.attlist
  42. menclose.attlist
  43. merror.attlist
  44. mfenced.attlist
  45. mfrac.attlist
  46. mglyph.attlist
  47. mi.attlist
  48. mlabeledtr.attlist
  49. mmultiscripts.attlist
  50. mn.attlist
  51. mo.attlist
  52. mode.attlist
  53. moment.attlist
  54. momentabout.attlist
  55. mover.attlist
  56. mpadded.attlist
  57. mphantom.attlist
  58. mroot.attlist
  59. mrow.attlist
  60. ms.attlist
  61. mspace.attlist
  62. msqrt.attlist
  63. mstyle.attlist
  64. msub.attlist
  65. msubsup.attlist
  66. msup.attlist
  67. mtable.attlist
  68. mtd.attlist
  69. mtext.attlist
  70. mtr.attlist
  71. munder.attlist
  72. munderover.attlist
  73. notin.attlist
  74. notprsubset.attlist
  75. notsubset.attlist
  76. outerproduct.attlist
  77. partialdiff.attlist
  78. piecewise.attlist
  79. prsubset.attlist
  80. scalarproduct.attlist
  81. sdev.attlist
  82. selector.attlist
  83. semantics.attlist
  84. set.attlist
  85. setdiff.attlist
  86. subset.attlist
  87. tendsto.attlist
  88. transpose.attlist
  89. union.attlist
  90. uplimit.attlist
  91. variance.attlist
  92. vector.attlist
  93. vectorproduct.attlist

complexTypes

  1. AlgebraicRule
  2. Arith.type
  3. AssignmentRule
  4. Compartment
  5. CompartmentType
  6. Constant.type
  7. Constraint
  8. Delay
  9. Elementary-functions.type
  10. Event
  11. EventAssignment
  12. FunctionDefinition
  13. Functions.type
  14. InitialAssignment
  15. KineticLaw
  16. ListOfEventAssignments
  17. ListOfModifierSpeciesReferences
  18. ListOfParameters
  19. ListOfSpeciesReferences
  20. ListOfUnits
  21. Logic.type
  22. Model
  23. ModifierSpeciesReference
  24. Parameter
  25. RateRule
  26. Reaction
  27. Relations.type
  28. Rule
  29. SBase
  30. Sbml
  31. SimpleSpeciesReference
  32. Species
  33. SpeciesReference
  34. SpeciesType
  35. StoichiometryMath
  36. Trigger
  37. Unit
  38. UnitDefinition
  39. annotation-xml.type
  40. annotation.type
  41. apply.type
  42. bvar.type
  43. card.type
  44. cartesianproduct.type
  45. ci.type
  46. cn.type
  47. condition.type
  48. csymbol.type
  49. curl.type
  50. declare.type
  51. degree.type
  52. determinant.type
  53. diff.type
  54. divergence.type
  55. domainofapplication.type
  56. grad.type
  57. in.type
  58. int.type
  59. intersect.type
  60. interval.type
  61. inverse.type
  62. lambda.type
  63. laplacian.type
  64. limit.type
  65. list.type
  66. logbase.type
  67. lowlimit.type
  68. maction.type
  69. maligngroup.type
  70. malignmark.type
  71. math.type
  72. matrix.type
  73. matrixrow.type
  74. mean.type
  75. median.type
  76. menclose.type
  77. merror.type
  78. mfenced.type
  79. mfrac.type
  80. mglyph.type
  81. mi.type
  82. mlabeledtr.type
  83. mmultiscripts.type
  84. mn.type
  85. mo.type
  86. mode.type
  87. moment.type
  88. momentabout.type
  89. mover.type
  90. mpadded.type
  91. mphantom.type
  92. mprescripts.type
  93. mroot.type
  94. mrow.type
  95. ms.type
  96. mspace.type
  97. msqrt.type
  98. mstyle.type
  99. msub.type
  100. msubsup.type
  101. msup.type
  102. mtable.type
  103. mtd.type
  104. mtext.type
  105. mtr.type
  106. munder.type
  107. munderover.type
  108. none.type
  109. notin.type
  110. notprsubset.type
  111. notsubset.type
  112. otherwise.type
  113. outerproduct.type
  114. partialdiff.type
  115. piece.type
  116. piecewise.type
  117. prsubset.type
  118. scalarproduct.type
  119. sdev.type
  120. selector.type
  121. semantics.type
  122. sep.type
  123. set.type
  124. setdiff.type
  125. subset.type
  126. tendsto.type
  127. transpose.type
  128. union.type
  129. uplimit.type
  130. variance.type
  131. vector.type
  132. vectorproduct.type

elements

  1. Constraint_message
  2. Event_delay
  3. Event_listOfEventAssignments
  4. Event_trigger
  5. KineticLaw_listOfParameters
  6. ListOfEventAssignments_eventAssignment
  7. ListOfModifierSpeciesReferences_modifierSpeciesReference
  8. ListOfParameters_parameter
  9. ListOfSpeciesReferences_speciesReference
  10. ListOfUnits_unit
  11. Model_Model_listOfCompartmentTypes_compartmentType
  12. Model_Model_listOfCompartments_compartment
  13. Model_Model_listOfConstraints_constraint
  14. Model_Model_listOfEvents_event
  15. Model_Model_listOfFunctionDefinitions_functionDefinition
  16. Model_Model_listOfInitialAssignments_initialAssignment
  17. Model_Model_listOfReactions_reaction
  18. Model_Model_listOfRules_algebraicRule
  19. Model_Model_listOfRules_assignmentRule
  20. Model_Model_listOfRules_rateRule
  21. Model_Model_listOfSpeciesTypes_speciesType
  22. Model_Model_listOfSpecies_species
  23. Model_Model_listOfUnitDefinitions_unitDefinition
  24. Model_listOfCompartmentTypes
  25. Model_listOfCompartments
  26. Model_listOfConstraints
  27. Model_listOfEvents
  28. Model_listOfFunctionDefinitions
  29. Model_listOfInitialAssignments
  30. Model_listOfParameters
  31. Model_listOfReactions
  32. Model_listOfRules
  33. Model_listOfSpecies
  34. Model_listOfSpeciesTypes
  35. Model_listOfUnitDefinitions
  36. Reaction_kineticLaw
  37. Reaction_listOfModifiers
  38. Reaction_listOfProducts
  39. Reaction_listOfReactants
  40. SBase_annotation
  41. SBase_notes
  42. Sbml_model
  43. SpeciesReference_stoichiometryMath
  44. UnitDefinition_listOfUnits
  45. abs
  46. and
  47. annotation
  48. annotation-xml
  49. apply
  50. approx
  51. arccos
  52. arccosh
  53. arccot
  54. arccoth
  55. arccsc
  56. arccsch
  57. arcsec
  58. arcsech
  59. arcsin
  60. arcsinh
  61. arctan
  62. arctanh
  63. arg
  64. bvar
  65. card
  66. cartesianproduct
  67. ceiling
  68. ci
  69. cn
  70. codomain
  71. complexes
  72. compose
  73. condition
  74. conjugate
  75. cos
  76. cosh
  77. cot
  78. coth
  79. csc
  80. csch
  81. csymbol
  82. curl
  83. declare
  84. degree
  85. determinant
  86. diff
  87. divergence
  88. divide
  89. domain
  90. domainofapplication
  91. emptyset
  92. eq
  93. equivalent
  94. eulergamma
  95. exists
  96. exp
  97. exponentiale
  98. factorial
  99. factorof
  100. false
  101. floor
  102. forall
  103. gcd
  104. geq
  105. grad
  106. gt
  107. ident
  108. image
  109. imaginary
  110. imaginaryi
  111. implies
  112. in
  113. infinity_ns.w3.org_1998_Math_MathML_infinity
  114. int
  115. integers
  116. intersect
  117. interval
  118. inverse
  119. lambda
  120. laplacian
  121. lcm
  122. leq
  123. limit
  124. list
  125. ln
  126. log
  127. logbase
  128. lowlimit
  129. lt
  130. maction
  131. maligngroup
  132. malignmark
  133. math
  134. matrix
  135. matrixrow
  136. max
  137. mean
  138. median
  139. menclose
  140. merror
  141. mfenced
  142. mfrac
  143. mglyph
  144. mi
  145. min
  146. minus
  147. mlabeledtr
  148. mmultiscripts
  149. mn
  150. mo
  151. mode
  152. moment
  153. momentabout
  154. mover
  155. mpadded
  156. mphantom
  157. mprescripts
  158. mroot
  159. mrow
  160. ms
  161. mspace
  162. msqrt
  163. mstyle
  164. msub
  165. msubsup
  166. msup
  167. mtable
  168. mtd
  169. mtext
  170. mtr
  171. munder
  172. munderover
  173. naturalnumbers
  174. neq
  175. none
  176. not
  177. notanumber
  178. notin
  179. notprsubset
  180. notsubset
  181. or
  182. otherwise
  183. outerproduct
  184. partialdiff
  185. pi
  186. piece
  187. piecewise
  188. plus
  189. power
  190. primes
  191. product
  192. prsubset
  193. quotient
  194. rationals
  195. real
  196. reals
  197. rem
  198. root
  199. sbml_ns.sbml.org_sbml_level2_version5_sbml
  200. scalarproduct
  201. sdev
  202. sec
  203. sech
  204. selector
  205. semantics
  206. sep
  207. set
  208. setdiff
  209. sin
  210. sinh
  211. subset
  212. sum
  213. tan
  214. tanh
  215. tendsto
  216. times
  217. transpose
  218. true
  219. union
  220. uplimit
  221. variance
  222. vector
  223. vectorproduct
  224. xor

elementGroups

  1. Annotation.class
  2. ContExpr.class
  3. Content-arith.class
  4. Content-calculus.class
  5. Content-constants.class
  6. Content-constructs.class
  7. Content-elementary-functions.class
  8. Content-expr.class
  9. Content-functions.class
  10. Content-linear-algebra.class
  11. Content-logic.class
  12. Content-relations.class
  13. Content-sets.class
  14. Content-statistics.class
  15. Content-token.content
  16. Content-tokens.class
  17. Content-vector-calculus.class
  18. Glyph-alignmark.class
  19. PresExpr.class
  20. Presentation-expr-or-none.class
  21. Presentation-expr.class
  22. Presentation-layout.class
  23. Presentation-script.class
  24. Presentation-table.class
  25. Presentation-token.class
  26. annotation-xml.content
  27. apply.content
  28. bvar.content
  29. cn.content
  30. condition.content
  31. declare.content
  32. degree.content
  33. domainofapplication.content
  34. lambda.content
  35. list.content
  36. logbase.content
  37. lowlimit.content
  38. maction.content
  39. math.content
  40. matrix.content
  41. matrixrow.content
  42. merror.content
  43. mlabeledtr.content
  44. mmultiscripts.content
  45. momentabout.content
  46. mstyle.content
  47. mtable.content
  48. mtd.content
  49. mtr.content
  50. otherwise.content
  51. piece.content
  52. piecewise.content
  53. semantics.content
  54. set.content
  55. uplimit.content
  56. vector.content

schemas

  1. action.xsd
  2. arith.xsd
  3. calculus.xsd
  4. characters.xsd
  5. common-attrib.xsd
  6. common-attribs.xsd
  7. common-types.xsd
  8. constants.xsd
  9. constructs.xsd
  10. elementary-functions.xsd
  11. error.xsd
  12. functions.xsd
  13. layout.xsd
  14. linear-algebra.xsd
  15. logic.xsd
  16. math.xsd
  17. mathml2.xsd
  18. relations.xsd
  19. sbml.xsd
  20. schema_NAMESPACE_http___www.w3.org_1998_Math_MathML_LOCATION_file__C__PROGRA_7E1_OXYGEN_7E1_frameworks_mathml_2.0_xsd_content_tokens.xsd
  21. schema_NAMESPACE_http___www.w3.org_1998_Math_MathML_LOCATION_file__C__PROGRA_7E1_OXYGEN_7E1_frameworks_mathml_2.0_xsd_presentation_common-attribs.xsd
  22. scripts.xsd
  23. semantics.xsd
  24. sets.xsd
  25. space.xsd
  26. statistics.xsd
  27. style.xsd
  28. table.xsd
  29. tokens.xsd
  30. vector-calculus.xsd
  31. xlink-href.xsd

simpleTypes

  1. RGB-color
  2. SBOTerm
  3. SId
  4. UnitSId
  5. centering
  6. infinity
  7. length-with-optional-unit
  8. length-with-unit
  9. mpadded-space
  10. mpadded-width-space
  11. named-space
  12. simple-size
  13. thickness