PDBx:struct_site_genType

Data items in the STRUCT_SITE_GEN category record details about
the generation of portions of the structure that contribute to
structurally relevant sites.

    Example 1 - based on PDB entry 5HVP and laboratory records for the
                structure corresponding to PDB entry 5HVP.
<PDBx:struct_site_genCategory>
   <PDBx:struct_site_gen id="1" site_id="1">
      <PDBx:details xsi:nil="true" />
      <PDBx:label_asym_id>A</PDBx:label_asym_id>
      <PDBx:label_comp_id>VAL</PDBx:label_comp_id>
      <PDBx:label_seq_id>32</PDBx:label_seq_id>
      <PDBx:symmetry>1_555</PDBx:symmetry>
   </PDBx:struct_site_gen>
   <PDBx:struct_site_gen id="2" site_id="1">
      <PDBx:details xsi:nil="true" />
      <PDBx:label_asym_id>A</PDBx:label_asym_id>
      <PDBx:label_comp_id>ILE</PDBx:label_comp_id>
      <PDBx:label_seq_id>47</PDBx:label_seq_id>
      <PDBx:symmetry>1_555</PDBx:symmetry>
   </PDBx:struct_site_gen>
   <PDBx:struct_site_gen id="3" site_id="1">
      <PDBx:details xsi:nil="true" />
      <PDBx:label_asym_id>A</PDBx:label_asym_id>
      <PDBx:label_comp_id>VAL</PDBx:label_comp_id>
      <PDBx:label_seq_id>82</PDBx:label_seq_id>
      <PDBx:symmetry>1_555</PDBx:symmetry>
   </PDBx:struct_site_gen>
   <PDBx:struct_site_gen id="4" site_id="1">
      <PDBx:details xsi:nil="true" />
      <PDBx:label_asym_id>A</PDBx:label_asym_id>
      <PDBx:label_comp_id>ILE</PDBx:label_comp_id>
      <PDBx:label_seq_id>84</PDBx:label_seq_id>
      <PDBx:symmetry>1_555</PDBx:symmetry>
   </PDBx:struct_site_gen>
   <PDBx:struct_site_gen id="5" site_id="2">
      <PDBx:details xsi:nil="true" />
      <PDBx:label_asym_id>B</PDBx:label_asym_id>
      <PDBx:label_comp_id>VAL</PDBx:label_comp_id>
      <PDBx:label_seq_id>232</PDBx:label_seq_id>
      <PDBx:symmetry>1_555</PDBx:symmetry>
   </PDBx:struct_site_gen>
   <PDBx:struct_site_gen id="6" site_id="2">
      <PDBx:details xsi:nil="true" />
      <PDBx:label_asym_id>B</PDBx:label_asym_id>
      <PDBx:label_comp_id>ILE</PDBx:label_comp_id>
      <PDBx:label_seq_id>247</PDBx:label_seq_id>
      <PDBx:symmetry>1_555</PDBx:symmetry>
   </PDBx:struct_site_gen>
   <PDBx:struct_site_gen id="7" site_id="2">
      <PDBx:details xsi:nil="true" />
      <PDBx:label_asym_id>B</PDBx:label_asym_id>
      <PDBx:label_comp_id>VAL</PDBx:label_comp_id>
      <PDBx:label_seq_id>282</PDBx:label_seq_id>
      <PDBx:symmetry>1_555</PDBx:symmetry>
   </PDBx:struct_site_gen>
   <PDBx:struct_site_gen id="8" site_id="2">
      <PDBx:details xsi:nil="true" />
      <PDBx:label_asym_id>B</PDBx:label_asym_id>
      <PDBx:label_comp_id>ILE</PDBx:label_comp_id>
      <PDBx:label_seq_id>284</PDBx:label_seq_id>
      <PDBx:symmetry>1_555</PDBx:symmetry>
   </PDBx:struct_site_gen>
</PDBx:struct_site_genCategory>

Complex Type Information

Model

Used By

Source

<xsd:complexType name="struct_site_genType">
  <xsd:annotation>
    <xsd:documentation xml:lang="en">Data items in the STRUCT_SITE_GEN category record details about the generation of portions of the structure that contribute to structurally relevant sites. Example 1 - based on PDB entry 5HVP and laboratory records for the structure corresponding to PDB entry 5HVP. <PDBx:struct_site_genCategory> <PDBx:struct_site_gen id="1" site_id="1"> <PDBx:details xsi:nil="true" /> <PDBx:label_asym_id>A</PDBx:label_asym_id> <PDBx:label_comp_id>VAL</PDBx:label_comp_id> <PDBx:label_seq_id>32</PDBx:label_seq_id> <PDBx:symmetry>1_555</PDBx:symmetry> </PDBx:struct_site_gen> <PDBx:struct_site_gen id="2" site_id="1"> <PDBx:details xsi:nil="true" /> <PDBx:label_asym_id>A</PDBx:label_asym_id> <PDBx:label_comp_id>ILE</PDBx:label_comp_id> <PDBx:label_seq_id>47</PDBx:label_seq_id> <PDBx:symmetry>1_555</PDBx:symmetry> </PDBx:struct_site_gen> <PDBx:struct_site_gen id="3" site_id="1"> <PDBx:details xsi:nil="true" /> <PDBx:label_asym_id>A</PDBx:label_asym_id> <PDBx:label_comp_id>VAL</PDBx:label_comp_id> <PDBx:label_seq_id>82</PDBx:label_seq_id> <PDBx:symmetry>1_555</PDBx:symmetry> </PDBx:struct_site_gen> <PDBx:struct_site_gen id="4" site_id="1"> <PDBx:details xsi:nil="true" /> <PDBx:label_asym_id>A</PDBx:label_asym_id> <PDBx:label_comp_id>ILE</PDBx:label_comp_id> <PDBx:label_seq_id>84</PDBx:label_seq_id> <PDBx:symmetry>1_555</PDBx:symmetry> </PDBx:struct_site_gen> <PDBx:struct_site_gen id="5" site_id="2"> <PDBx:details xsi:nil="true" /> <PDBx:label_asym_id>B</PDBx:label_asym_id> <PDBx:label_comp_id>VAL</PDBx:label_comp_id> <PDBx:label_seq_id>232</PDBx:label_seq_id> <PDBx:symmetry>1_555</PDBx:symmetry> </PDBx:struct_site_gen> <PDBx:struct_site_gen id="6" site_id="2"> <PDBx:details xsi:nil="true" /> <PDBx:label_asym_id>B</PDBx:label_asym_id> <PDBx:label_comp_id>ILE</PDBx:label_comp_id> <PDBx:label_seq_id>247</PDBx:label_seq_id> <PDBx:symmetry>1_555</PDBx:symmetry> </PDBx:struct_site_gen> <PDBx:struct_site_gen id="7" site_id="2"> <PDBx:details xsi:nil="true" /> <PDBx:label_asym_id>B</PDBx:label_asym_id> <PDBx:label_comp_id>VAL</PDBx:label_comp_id> <PDBx:label_seq_id>282</PDBx:label_seq_id> <PDBx:symmetry>1_555</PDBx:symmetry> </PDBx:struct_site_gen> <PDBx:struct_site_gen id="8" site_id="2"> <PDBx:details xsi:nil="true" /> <PDBx:label_asym_id>B</PDBx:label_asym_id> <PDBx:label_comp_id>ILE</PDBx:label_comp_id> <PDBx:label_seq_id>284</PDBx:label_seq_id> <PDBx:symmetry>1_555</PDBx:symmetry> </PDBx:struct_site_gen> </PDBx:struct_site_genCategory></xsd:documentation>
  </xsd:annotation>
  <xsd:sequence>
    <xsd:element name="struct_site_gen" minOccurs="0" maxOccurs="unbounded">
      <xsd:complexType>
        <xsd:all>
          <xsd:element name="auth_asym_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A component of the identifier for participants in the site. This data item is a pointer to attribute auth_asym_id in category atom_site in the ATOM_SITE category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="auth_atom_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A component of the identifier for participants in the site. This data item is a pointer to attribute auth_atom_id in category atom_site in the ATOM_SITE category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="auth_comp_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A component of the identifier for participants in the site. This data item is a pointer to attribute auth_comp_id in category atom_site in the ATOM_SITE category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="auth_seq_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A component of the identifier for participants in the site. This data item is a pointer to attribute auth_seq_id in category atom_site in the ATOM_SITE category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A description of special aspects of the symmetry generation of this portion of the structural site. The zinc atom lies on a special position; application of symmetry elements to generate the insulin hexamer will generate excess zinc atoms, which must be removed by hand.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="label_alt_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A component of the identifier for participants in the site. This data item is a pointer to attribute id in category atom_sites_alt in the ATOM_SITES_ALT category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="label_asym_id" minOccurs="1" maxOccurs="1" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A component of the identifier for participants in the site. This data item is a pointer to attribute label_asym_id in category atom_site in the ATOM_SITE category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="label_atom_id" minOccurs="1" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A component of the identifier for participants in the site. This data item is a pointer to attribute atom_id in category chem_comp_atom in the CHEM_COMP_ATOM category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="label_comp_id" minOccurs="1" maxOccurs="1" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A component of the identifier for participants in the site. This data item is a pointer to attribute label_comp_id in category atom_site in the ATOM_SITE category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="label_seq_id" minOccurs="1" maxOccurs="1" nillable="true" type="xsd:integer">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A component of the identifier for participants in the site. This data item is a pointer to attribute label_seq_id in category atom_site in the ATOM_SITE category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_auth_ins_code" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">PDB insertion code.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_num_res" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:integer">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Number of residues in the site.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="symmetry" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Describes the symmetry operation that should be applied to the atom set specified by attribute label* in category struct_site_gen to generate a portion of the site. 4th symmetry operation applied 4 7th symm. posn.; +a on x; -b on y 7_645</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
        </xsd:all>
        <xsd:attribute name="id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">The value of attribute id in category struct_site_gen must uniquely identify a record in the STRUCT_SITE_GEN list. Note that this item need not be a number; it can be any unique identifier.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="site_id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category struct_site in the STRUCT_SITE category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:complexType>
    </xsd:element>
  </xsd:sequence>
</xsd:complexType>