Data items in the STRUCT_REF_SEQ_DIF category provide a mechanism for indicating and annotating point differences between the sequence of the entity or biological unit described in the data block and the sequence of the referenced database entry. Example 1 - based on laboratory records for CAP-DNA complex. <PDBx:struct_ref_seq_difCategory> <PDBx:struct_ref_seq_dif pdbx_ordinal="1"> <PDBx:align_id>algn2</PDBx:align_id> <PDBx:db_mon_id>GLU</PDBx:db_mon_id> <PDBx:details> A point mutation was introduced in the CAP at position 181 substituting PHE for GLU.</PDBx:details> <PDBx:mon_id>PHE</PDBx:mon_id> <PDBx:seq_num>181</PDBx:seq_num> </PDBx:struct_ref_seq_dif> </PDBx:struct_ref_seq_difCategory> |
<xsd:complexType name="struct_ref_seq_difType"> <xsd:annotation> <xsd:documentation xml:lang="en">Data items in the STRUCT_REF_SEQ_DIF category provide a mechanism for indicating and annotating point differences between the sequence of the entity or biological unit described in the data block and the sequence of the referenced database entry. Example 1 - based on laboratory records for CAP-DNA complex. <PDBx:struct_ref_seq_difCategory> <PDBx:struct_ref_seq_dif pdbx_ordinal="1"> <PDBx:align_id>algn2</PDBx:align_id> <PDBx:db_mon_id>GLU</PDBx:db_mon_id> <PDBx:details> A point mutation was introduced in the CAP at position 181 substituting PHE for GLU.</PDBx:details> <PDBx:mon_id>PHE</PDBx:mon_id> <PDBx:seq_num>181</PDBx:seq_num> </PDBx:struct_ref_seq_dif> </PDBx:struct_ref_seq_difCategory></xsd:documentation> </xsd:annotation> <xsd:sequence> <xsd:element name="struct_ref_seq_dif" minOccurs="0" maxOccurs="unbounded"> <xsd:complexType> <xsd:all> <xsd:element name="align_id" minOccurs="1" maxOccurs="1" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">This data item is a pointer to attribute align_id in category struct_ref_seq in the STRUCT_REF_SEQ category.</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="db_mon_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">The monomer type found at this position in the referenced database entry. This data item is a pointer to attribute id in category chem_comp in the CHEM_COMP category.</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">A description of special aspects of the point differences between the sequence of the entity or biological unit described in the data block and that in the referenced database entry.</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="mon_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">The monomer type found at this position in the sequence of the entity or biological unit described in this data block. This data item is a pointer to attribute id in category chem_comp in the CHEM_COMP category.</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="pdbx_auth_seq_num" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">Insertion code in PDB sequence 1 2</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="pdbx_pdb_id_code" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">The PDB ID code. 1BBP</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="pdbx_pdb_ins_code" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">Insertion code in PDB sequence 1 2</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="pdbx_pdb_strand_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">PDB strand/chain id. A B</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="pdbx_seq_db_accession_code" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">Sequence database accession number. P07617</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="pdbx_seq_db_name" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">Sequence database name. SWS</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="pdbx_seq_db_seq_num" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">Sequence database sequence number. 142</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="seq_num" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:integer"> <xsd:annotation> <xsd:documentation xml:lang="en">This data item is a pointer to attribute num in category entity_poly_seq in the ENTITY_POLY_SEQ category.</xsd:documentation> </xsd:annotation> </xsd:element> </xsd:all> <xsd:attribute name="pdbx_ordinal" use="required" type="xsd:integer"> <xsd:annotation> <xsd:documentation xml:lang="en">A synthetic integer primary key for this category.</xsd:documentation> </xsd:annotation> </xsd:attribute> </xsd:complexType> </xsd:element> </xsd:sequence> </xsd:complexType> |