PDBx:struct_ref_seq_difType

Data items in the STRUCT_REF_SEQ_DIF category provide a
mechanism for indicating and annotating point differences
between the sequence of the entity or biological unit described
in the data block and the sequence of the referenced database
entry.

    Example 1 - based on laboratory records for CAP-DNA complex.
<PDBx:struct_ref_seq_difCategory>
   <PDBx:struct_ref_seq_dif pdbx_ordinal="1">
      <PDBx:align_id>algn2</PDBx:align_id>
      <PDBx:db_mon_id>GLU</PDBx:db_mon_id>
      <PDBx:details> A point mutation was introduced in the CAP at position 181
substituting PHE for GLU.</PDBx:details>
      <PDBx:mon_id>PHE</PDBx:mon_id>
      <PDBx:seq_num>181</PDBx:seq_num>
   </PDBx:struct_ref_seq_dif>
</PDBx:struct_ref_seq_difCategory>

Complex Type Information

Model

Used By

Source

<xsd:complexType name="struct_ref_seq_difType">
  <xsd:annotation>
    <xsd:documentation xml:lang="en">Data items in the STRUCT_REF_SEQ_DIF category provide a mechanism for indicating and annotating point differences between the sequence of the entity or biological unit described in the data block and the sequence of the referenced database entry. Example 1 - based on laboratory records for CAP-DNA complex. <PDBx:struct_ref_seq_difCategory> <PDBx:struct_ref_seq_dif pdbx_ordinal="1"> <PDBx:align_id>algn2</PDBx:align_id> <PDBx:db_mon_id>GLU</PDBx:db_mon_id> <PDBx:details> A point mutation was introduced in the CAP at position 181 substituting PHE for GLU.</PDBx:details> <PDBx:mon_id>PHE</PDBx:mon_id> <PDBx:seq_num>181</PDBx:seq_num> </PDBx:struct_ref_seq_dif> </PDBx:struct_ref_seq_difCategory></xsd:documentation>
  </xsd:annotation>
  <xsd:sequence>
    <xsd:element name="struct_ref_seq_dif" minOccurs="0" maxOccurs="unbounded">
      <xsd:complexType>
        <xsd:all>
          <xsd:element name="align_id" minOccurs="1" maxOccurs="1" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">This data item is a pointer to attribute align_id in category struct_ref_seq in the STRUCT_REF_SEQ category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="db_mon_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The monomer type found at this position in the referenced database entry. This data item is a pointer to attribute id in category chem_comp in the CHEM_COMP category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A description of special aspects of the point differences between the sequence of the entity or biological unit described in the data block and that in the referenced database entry.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="mon_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The monomer type found at this position in the sequence of the entity or biological unit described in this data block. This data item is a pointer to attribute id in category chem_comp in the CHEM_COMP category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_auth_seq_num" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Insertion code in PDB sequence 1 2</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_pdb_id_code" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The PDB ID code. 1BBP</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_pdb_ins_code" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Insertion code in PDB sequence 1 2</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_pdb_strand_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">PDB strand/chain id. A B</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_seq_db_accession_code" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Sequence database accession number. P07617</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_seq_db_name" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Sequence database name. SWS</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_seq_db_seq_num" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Sequence database sequence number. 142</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="seq_num" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:integer">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">This data item is a pointer to attribute num in category entity_poly_seq in the ENTITY_POLY_SEQ category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
        </xsd:all>
        <xsd:attribute name="pdbx_ordinal" use="required" type="xsd:integer">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">A synthetic integer primary key for this category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:complexType>
    </xsd:element>
  </xsd:sequence>
</xsd:complexType>