PDBx:struct_biol_viewType

Data items in the STRUCT_BIOL_VIEW category record details
about how to draw and annotate an informative view of the
biological structure.

    Example 1 - based on NDB structure GDL001 by Coll, Aymami,
                Van Der Marel, Van Boom, Rich & Wang
                [Biochemistry, (1989), 28, 310-320].
<PDBx:struct_biol_viewCategory>
   <PDBx:struct_biol_view biol_id="c1" id="1">
      <PDBx:details> This view highlights the ATAT-Netropsin interaction in the
DNA-drug complex.</PDBx:details>
      <PDBx:rot_matrix11>0.132</PDBx:rot_matrix11>
      <PDBx:rot_matrix12>0.922</PDBx:rot_matrix12>
      <PDBx:rot_matrix13>-0.363</PDBx:rot_matrix13>
      <PDBx:rot_matrix21>0.131</PDBx:rot_matrix21>
      <PDBx:rot_matrix22>-0.380</PDBx:rot_matrix22>
      <PDBx:rot_matrix23>-0.916</PDBx:rot_matrix23>
      <PDBx:rot_matrix31>-0.982</PDBx:rot_matrix31>
      <PDBx:rot_matrix32>0.073</PDBx:rot_matrix32>
      <PDBx:rot_matrix33>-0.172</PDBx:rot_matrix33>
   </PDBx:struct_biol_view>
</PDBx:struct_biol_viewCategory>

Complex Type Information

Model

Used By

Source

<xsd:complexType name="struct_biol_viewType">
  <xsd:annotation>
    <xsd:documentation xml:lang="en">Data items in the STRUCT_BIOL_VIEW category record details about how to draw and annotate an informative view of the biological structure. Example 1 - based on NDB structure GDL001 by Coll, Aymami, Van Der Marel, Van Boom, Rich & Wang [Biochemistry, (1989), 28, 310-320]. <PDBx:struct_biol_viewCategory> <PDBx:struct_biol_view biol_id="c1" id="1"> <PDBx:details> This view highlights the ATAT-Netropsin interaction in the DNA-drug complex.</PDBx:details> <PDBx:rot_matrix11>0.132</PDBx:rot_matrix11> <PDBx:rot_matrix12>0.922</PDBx:rot_matrix12> <PDBx:rot_matrix13>-0.363</PDBx:rot_matrix13> <PDBx:rot_matrix21>0.131</PDBx:rot_matrix21> <PDBx:rot_matrix22>-0.380</PDBx:rot_matrix22> <PDBx:rot_matrix23>-0.916</PDBx:rot_matrix23> <PDBx:rot_matrix31>-0.982</PDBx:rot_matrix31> <PDBx:rot_matrix32>0.073</PDBx:rot_matrix32> <PDBx:rot_matrix33>-0.172</PDBx:rot_matrix33> </PDBx:struct_biol_view> </PDBx:struct_biol_viewCategory></xsd:documentation>
  </xsd:annotation>
  <xsd:sequence>
    <xsd:element name="struct_biol_view" minOccurs="0" maxOccurs="unbounded">
      <xsd:complexType>
        <xsd:all>
          <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A description of special aspects of this view of the biological structure. This data item can be used as a figure legend. The enzyme has been oriented with the molecular twofold axis aligned with the horizontal axis of the figure.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="rot_matrix11" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The [1][1] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="rot_matrix12" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The [1][2] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="rot_matrix13" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The [1][3] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="rot_matrix21" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The [2][1] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="rot_matrix22" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The [2][2] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="rot_matrix23" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The [2][3] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="rot_matrix31" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The [3][1] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="rot_matrix32" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The [3][2] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="rot_matrix33" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The [3][3] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
        </xsd:all>
        <xsd:attribute name="biol_id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category struct_biol in the STRUCT_BIOL category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">The value of attribute id in category struct_biol_view must uniquely identify a record in the STRUCT_BIOL_VIEW list. Note that this item need not be a number; it can be any unique identifier. Figure 1 unliganded enzyme view down enzyme active site</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:complexType>
    </xsd:element>
  </xsd:sequence>
</xsd:complexType>