Data items in the STRUCT_BIOL_VIEW category record details about how to draw and annotate an informative view of the biological structure. Example 1 - based on NDB structure GDL001 by Coll, Aymami, Van Der Marel, Van Boom, Rich & Wang [Biochemistry, (1989), 28, 310-320]. <PDBx:struct_biol_viewCategory> <PDBx:struct_biol_view biol_id="c1" id="1"> <PDBx:details> This view highlights the ATAT-Netropsin interaction in the DNA-drug complex.</PDBx:details> <PDBx:rot_matrix11>0.132</PDBx:rot_matrix11> <PDBx:rot_matrix12>0.922</PDBx:rot_matrix12> <PDBx:rot_matrix13>-0.363</PDBx:rot_matrix13> <PDBx:rot_matrix21>0.131</PDBx:rot_matrix21> <PDBx:rot_matrix22>-0.380</PDBx:rot_matrix22> <PDBx:rot_matrix23>-0.916</PDBx:rot_matrix23> <PDBx:rot_matrix31>-0.982</PDBx:rot_matrix31> <PDBx:rot_matrix32>0.073</PDBx:rot_matrix32> <PDBx:rot_matrix33>-0.172</PDBx:rot_matrix33> </PDBx:struct_biol_view> </PDBx:struct_biol_viewCategory> |
<xsd:complexType name="struct_biol_viewType"> <xsd:annotation> <xsd:documentation xml:lang="en">Data items in the STRUCT_BIOL_VIEW category record details about how to draw and annotate an informative view of the biological structure. Example 1 - based on NDB structure GDL001 by Coll, Aymami, Van Der Marel, Van Boom, Rich & Wang [Biochemistry, (1989), 28, 310-320]. <PDBx:struct_biol_viewCategory> <PDBx:struct_biol_view biol_id="c1" id="1"> <PDBx:details> This view highlights the ATAT-Netropsin interaction in the DNA-drug complex.</PDBx:details> <PDBx:rot_matrix11>0.132</PDBx:rot_matrix11> <PDBx:rot_matrix12>0.922</PDBx:rot_matrix12> <PDBx:rot_matrix13>-0.363</PDBx:rot_matrix13> <PDBx:rot_matrix21>0.131</PDBx:rot_matrix21> <PDBx:rot_matrix22>-0.380</PDBx:rot_matrix22> <PDBx:rot_matrix23>-0.916</PDBx:rot_matrix23> <PDBx:rot_matrix31>-0.982</PDBx:rot_matrix31> <PDBx:rot_matrix32>0.073</PDBx:rot_matrix32> <PDBx:rot_matrix33>-0.172</PDBx:rot_matrix33> </PDBx:struct_biol_view> </PDBx:struct_biol_viewCategory></xsd:documentation> </xsd:annotation> <xsd:sequence> <xsd:element name="struct_biol_view" minOccurs="0" maxOccurs="unbounded"> <xsd:complexType> <xsd:all> <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">A description of special aspects of this view of the biological structure. This data item can be used as a figure legend. The enzyme has been oriented with the molecular twofold axis aligned with the horizontal axis of the figure.</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="rot_matrix11" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal"> <xsd:annotation> <xsd:documentation xml:lang="en">The [1][1] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="rot_matrix12" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal"> <xsd:annotation> <xsd:documentation xml:lang="en">The [1][2] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="rot_matrix13" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal"> <xsd:annotation> <xsd:documentation xml:lang="en">The [1][3] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="rot_matrix21" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal"> <xsd:annotation> <xsd:documentation xml:lang="en">The [2][1] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="rot_matrix22" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal"> <xsd:annotation> <xsd:documentation xml:lang="en">The [2][2] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="rot_matrix23" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal"> <xsd:annotation> <xsd:documentation xml:lang="en">The [2][3] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="rot_matrix31" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal"> <xsd:annotation> <xsd:documentation xml:lang="en">The [3][1] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="rot_matrix32" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal"> <xsd:annotation> <xsd:documentation xml:lang="en">The [3][2] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="rot_matrix33" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal"> <xsd:annotation> <xsd:documentation xml:lang="en">The [3][3] element of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in attribute details. in category struct_biol_view |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|</xsd:documentation> </xsd:annotation> </xsd:element> </xsd:all> <xsd:attribute name="biol_id" use="required" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category struct_biol in the STRUCT_BIOL category.</xsd:documentation> </xsd:annotation> </xsd:attribute> <xsd:attribute name="id" use="required" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">The value of attribute id in category struct_biol_view must uniquely identify a record in the STRUCT_BIOL_VIEW list. Note that this item need not be a number; it can be any unique identifier. Figure 1 unliganded enzyme view down enzyme active site</xsd:documentation> </xsd:annotation> </xsd:attribute> </xsd:complexType> </xsd:element> </xsd:sequence> </xsd:complexType> |