PDBx:struct_biol_genType

Data items in the STRUCT_BIOL_GEN category record details about
the generation of each biological unit. The STRUCT_BIOL_GEN
data items provide the specifications of the components that
constitute that biological unit, which may include symmetry
elements.

    Example 1 - based on PDB entry 5HVP and laboratory records for the
                structure corresponding to PDB entry 5HVP.
<PDBx:struct_biol_genCategory>
   <PDBx:struct_biol_gen asym_id="A" biol_id="1" symmetry="1_555"></PDBx:struct_biol_gen>
   <PDBx:struct_biol_gen asym_id="B" biol_id="1" symmetry="1_555"></PDBx:struct_biol_gen>
   <PDBx:struct_biol_gen asym_id="A" biol_id="2" symmetry="1_555"></PDBx:struct_biol_gen>
   <PDBx:struct_biol_gen asym_id="B" biol_id="2" symmetry="1_555"></PDBx:struct_biol_gen>
   <PDBx:struct_biol_gen asym_id="C" biol_id="2" symmetry="1_555"></PDBx:struct_biol_gen>
   <PDBx:struct_biol_gen asym_id="A" biol_id="3" symmetry="1_555"></PDBx:struct_biol_gen>
   <PDBx:struct_biol_gen asym_id="B" biol_id="3" symmetry="1_555"></PDBx:struct_biol_gen>
   <PDBx:struct_biol_gen asym_id="D" biol_id="3" symmetry="1_555"></PDBx:struct_biol_gen>
</PDBx:struct_biol_genCategory>

Complex Type Information

Model

Used By

Source

<xsd:complexType name="struct_biol_genType">
  <xsd:annotation>
    <xsd:documentation xml:lang="en">Data items in the STRUCT_BIOL_GEN category record details about the generation of each biological unit. The STRUCT_BIOL_GEN data items provide the specifications of the components that constitute that biological unit, which may include symmetry elements. Example 1 - based on PDB entry 5HVP and laboratory records for the structure corresponding to PDB entry 5HVP. <PDBx:struct_biol_genCategory> <PDBx:struct_biol_gen asym_id="A" biol_id="1" symmetry="1_555"></PDBx:struct_biol_gen> <PDBx:struct_biol_gen asym_id="B" biol_id="1" symmetry="1_555"></PDBx:struct_biol_gen> <PDBx:struct_biol_gen asym_id="A" biol_id="2" symmetry="1_555"></PDBx:struct_biol_gen> <PDBx:struct_biol_gen asym_id="B" biol_id="2" symmetry="1_555"></PDBx:struct_biol_gen> <PDBx:struct_biol_gen asym_id="C" biol_id="2" symmetry="1_555"></PDBx:struct_biol_gen> <PDBx:struct_biol_gen asym_id="A" biol_id="3" symmetry="1_555"></PDBx:struct_biol_gen> <PDBx:struct_biol_gen asym_id="B" biol_id="3" symmetry="1_555"></PDBx:struct_biol_gen> <PDBx:struct_biol_gen asym_id="D" biol_id="3" symmetry="1_555"></PDBx:struct_biol_gen> </PDBx:struct_biol_genCategory></xsd:documentation>
  </xsd:annotation>
  <xsd:sequence>
    <xsd:element name="struct_biol_gen" minOccurs="0" maxOccurs="unbounded">
      <xsd:complexType>
        <xsd:all>
          <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A description of special aspects of the symmetry generation of this portion of the biological structure. The zinc atom lies on a special position; application of symmetry elements to generate the insulin hexamer will generate excess zinc atoms, which must be removed by hand.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_PDB_order" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:integer">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">An ordering index used to reproduce the presentation of chain order in the original PDB format data files. 1 2 3</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_full_symmetry_operation" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">This item expresses category attribute symmetry in category struct_biol_gen on an X, Y and Z basis. -X, Y+1/2, -Z</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
        </xsd:all>
        <xsd:attribute name="asym_id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category struct_asym in the STRUCT_ASYM category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="biol_id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category struct_biol in the STRUCT_BIOL category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="symmetry" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">Describes the symmetry operation that should be applied to the atom set specified by attribute asym_id in category struct_biol_gen to generate a portion of the biological structure. 4th symmetry operation applied 4 7th symm. posn.; +a on x; -b on y 7_645</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:complexType>
    </xsd:element>
  </xsd:sequence>
</xsd:complexType>