PDBx:publ_bodyType

Data items in the PUBL_BODY category permit the labelling of
different text sections within the body of a paper.
Note that these should not be used in a paper which has
a standard format with sections tagged by specific data names
(such as in Acta Crystallographica Section C). Typically,
each journal will supply a list of the specific items it
requires in its Notes for Authors.

    Example 1 - based on a paper by R. Restori & D. Schwarzenbach
                [Acta Cryst. (1996), A52, 369-378].
<PDBx:publ_bodyCategory>
   <PDBx:publ_body element="section" label="1">
      <PDBx:contents> X-ray diffraction from a crystalline material provides
information on the thermally and spatially averaged
electron density in the crystal...</PDBx:contents>
      <PDBx:format>cif</PDBx:format>
      <PDBx:title>Introduction</PDBx:title>
   </PDBx:publ_body>
   <PDBx:publ_body element="section" label="2">
      <PDBx:contents> In the rigid-atom approximation, the dynamic electron
density of an atom is described by the convolution
product of the static atomic density and a probability
density function,
$\rho_{dyn}(\bf r) = \rho_{stat}(\bf r) * P(\bf r). \eqno(1)$</PDBx:contents>
      <PDBx:format>tex</PDBx:format>
      <PDBx:title>Theory</PDBx:title>
   </PDBx:publ_body>
</PDBx:publ_bodyCategory>


    Example 2 - based on a paper by R. J. Papoular, Y. Vekhter & P. Coppens
                [Acta Cryst. (1996), A52, 397-407].
<PDBx:publ_bodyCategory>
   <PDBx:publ_body element="section" label="3">
      <PDBx:contents xsi:nil="true" />
      <PDBx:title> The two-channel method for retrieval of the deformation
electron density</PDBx:title>
   </PDBx:publ_body>
   <PDBx:publ_body element="subsection" label="3.1">
      <PDBx:contents> As the wide dynamic range involved in the total electron
density...</PDBx:contents>
      <PDBx:title>The two-channel entropy S[\D\r(r)]</PDBx:title>
   </PDBx:publ_body>
   <PDBx:publ_body element="subsection" label="3.2">
      <PDBx:contents xsi:nil="true" />
      <PDBx:title>Uniform vs informative prior model densities</PDBx:title>
   </PDBx:publ_body>
   <PDBx:publ_body element="subsubsection" label="3.2.1">
      <PDBx:contents> Straightforward algebra leads to expressions analogous
to...</PDBx:contents>
      <PDBx:title>Use of uniform models</PDBx:title>
   </PDBx:publ_body>
</PDBx:publ_bodyCategory>

Complex Type Information

Model

Children: PDBx:publ_body

Used By

Source

<xsd:complexType name="publ_bodyType">
  <xsd:annotation>
    <xsd:documentation xml:lang="en">Data items in the PUBL_BODY category permit the labelling of different text sections within the body of a paper. Note that these should not be used in a paper which has a standard format with sections tagged by specific data names (such as in Acta Crystallographica Section C). Typically, each journal will supply a list of the specific items it requires in its Notes for Authors. Example 1 - based on a paper by R. Restori & D. Schwarzenbach [Acta Cryst. (1996), A52, 369-378]. <PDBx:publ_bodyCategory> <PDBx:publ_body element="section" label="1"> <PDBx:contents> X-ray diffraction from a crystalline material provides information on the thermally and spatially averaged electron density in the crystal...</PDBx:contents> <PDBx:format>cif</PDBx:format> <PDBx:title>Introduction</PDBx:title> </PDBx:publ_body> <PDBx:publ_body element="section" label="2"> <PDBx:contents> In the rigid-atom approximation, the dynamic electron density of an atom is described by the convolution product of the static atomic density and a probability density function, $\rho_{dyn}(\bf r) = \rho_{stat}(\bf r) * P(\bf r). \eqno(1)$</PDBx:contents> <PDBx:format>tex</PDBx:format> <PDBx:title>Theory</PDBx:title> </PDBx:publ_body> </PDBx:publ_bodyCategory> Example 2 - based on a paper by R. J. Papoular, Y. Vekhter & P. Coppens [Acta Cryst. (1996), A52, 397-407]. <PDBx:publ_bodyCategory> <PDBx:publ_body element="section" label="3"> <PDBx:contents xsi:nil="true" /> <PDBx:title> The two-channel method for retrieval of the deformation electron density</PDBx:title> </PDBx:publ_body> <PDBx:publ_body element="subsection" label="3.1"> <PDBx:contents> As the wide dynamic range involved in the total electron density...</PDBx:contents> <PDBx:title>The two-channel entropy S[\D\r(r)]</PDBx:title> </PDBx:publ_body> <PDBx:publ_body element="subsection" label="3.2"> <PDBx:contents xsi:nil="true" /> <PDBx:title>Uniform vs informative prior model densities</PDBx:title> </PDBx:publ_body> <PDBx:publ_body element="subsubsection" label="3.2.1"> <PDBx:contents> Straightforward algebra leads to expressions analogous to...</PDBx:contents> <PDBx:title>Use of uniform models</PDBx:title> </PDBx:publ_body> </PDBx:publ_bodyCategory></xsd:documentation>
  </xsd:annotation>
  <xsd:sequence>
    <xsd:element name="publ_body" minOccurs="0" maxOccurs="unbounded">
      <xsd:complexType>
        <xsd:all>
          <xsd:element name="contents" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A text section of a paper.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="format" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Code indicating the appropriate typesetting conventions for accented characters and special symbols in the text section.</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:string">
                <xsd:enumeration value="ascii"/>
                <xsd:enumeration value="cif"/>
                <xsd:enumeration value="latex"/>
                <xsd:enumeration value="sgml"/>
                <xsd:enumeration value="tex"/>
                <xsd:enumeration value="troff"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
          <xsd:element name="title" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Title of the associated section of text.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
        </xsd:all>
        <xsd:attribute name="element" use="required">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">The functional role of the associated text section.</xsd:documentation>
          </xsd:annotation>
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="section"/>
              <xsd:enumeration value="subsection"/>
              <xsd:enumeration value="subsubsection"/>
              <xsd:enumeration value="appendix"/>
              <xsd:enumeration value="footnote"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:attribute>
        <xsd:attribute name="label" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">Code identifying the section of text. 1 1.1 2.1.3</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:complexType>
    </xsd:element>
  </xsd:sequence>
</xsd:complexType>