Data items in the PDBX_CONSTRUCT_FEATURE category may be used to specify various properties of a nucleic acid sequence used during protein production. Example 1 - vector pUC28 <PDBx:pdbx_construct_featureCategory> <PDBx:pdbx_construct_feature construct_id="1" id="1"> <PDBx:details>pKK84-1 ClaI 5260bp 5247..5247 ptac11 TaqI-TaqI 192bp, -35 trp promoter -> pEA300 5452bp</PDBx:details> <PDBx:end_seq xsi:nil="true" /> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq xsi:nil="true" /> <PDBx:type xsi:nil="true" /> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="2"> <PDBx:details>pKK84-1 1..5246 5246bp ClaI = AT^CGAT TaqI = T^CGA cgact...</PDBx:details> <PDBx:end_seq xsi:nil="true" /> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq xsi:nil="true" /> <PDBx:type xsi:nil="true" /> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="3"> <PDBx:details>ptac11 190bp ...cat TaqI = T^CGA ClaI = AT^CGAT</PDBx:details> <PDBx:end_seq>5436</PDBx:end_seq> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq>5247</PDBx:start_seq> <PDBx:type xsi:nil="true" /> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="4"> <PDBx:details>pKK84-1 5247..5260 14bp</PDBx:details> <PDBx:end_seq>5450</PDBx:end_seq> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq>5437</PDBx:start_seq> <PDBx:type xsi:nil="true" /> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="5"> <PDBx:details>SIT unique EcoRI-ClaI-HindIII-BamHI-PvuII</PDBx:details> <PDBx:end_seq xsi:nil="true" /> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq xsi:nil="true" /> <PDBx:type>misc_binding</PDBx:type> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="6"> <PDBx:details>ORI E. coli pMB1 (ColE1 and pBR322)</PDBx:details> <PDBx:end_seq xsi:nil="true" /> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq xsi:nil="true" /> <PDBx:type>rep_origin</PDBx:type> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="7"> <PDBx:details>PRO E. coli trp</PDBx:details> <PDBx:end_seq xsi:nil="true" /> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq xsi:nil="true" /> <PDBx:type>promoter</PDBx:type> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="8"> <PDBx:details>ANT E. coli beta-lactamase gene (bla) ampicillin resistance gene (apr/amp)</PDBx:details> <PDBx:end_seq xsi:nil="true" /> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq xsi:nil="true" /> <PDBx:type>CDS</PDBx:type> </PDBx:pdbx_construct_feature> </PDBx:pdbx_construct_featureCategory> |
<xsd:complexType name="pdbx_construct_featureType"> <xsd:annotation> <xsd:documentation xml:lang="en">Data items in the PDBX_CONSTRUCT_FEATURE category may be used to specify various properties of a nucleic acid sequence used during protein production. Example 1 - vector pUC28 <PDBx:pdbx_construct_featureCategory> <PDBx:pdbx_construct_feature construct_id="1" id="1"> <PDBx:details>pKK84-1 ClaI 5260bp 5247..5247 ptac11 TaqI-TaqI 192bp, -35 trp promoter -> pEA300 5452bp</PDBx:details> <PDBx:end_seq xsi:nil="true" /> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq xsi:nil="true" /> <PDBx:type xsi:nil="true" /> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="2"> <PDBx:details>pKK84-1 1..5246 5246bp ClaI = AT^CGAT TaqI = T^CGA cgact...</PDBx:details> <PDBx:end_seq xsi:nil="true" /> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq xsi:nil="true" /> <PDBx:type xsi:nil="true" /> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="3"> <PDBx:details>ptac11 190bp ...cat TaqI = T^CGA ClaI = AT^CGAT</PDBx:details> <PDBx:end_seq>5436</PDBx:end_seq> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq>5247</PDBx:start_seq> <PDBx:type xsi:nil="true" /> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="4"> <PDBx:details>pKK84-1 5247..5260 14bp</PDBx:details> <PDBx:end_seq>5450</PDBx:end_seq> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq>5437</PDBx:start_seq> <PDBx:type xsi:nil="true" /> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="5"> <PDBx:details>SIT unique EcoRI-ClaI-HindIII-BamHI-PvuII</PDBx:details> <PDBx:end_seq xsi:nil="true" /> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq xsi:nil="true" /> <PDBx:type>misc_binding</PDBx:type> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="6"> <PDBx:details>ORI E. coli pMB1 (ColE1 and pBR322)</PDBx:details> <PDBx:end_seq xsi:nil="true" /> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq xsi:nil="true" /> <PDBx:type>rep_origin</PDBx:type> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="7"> <PDBx:details>PRO E. coli trp</PDBx:details> <PDBx:end_seq xsi:nil="true" /> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq xsi:nil="true" /> <PDBx:type>promoter</PDBx:type> </PDBx:pdbx_construct_feature> <PDBx:pdbx_construct_feature construct_id="1" id="8"> <PDBx:details>ANT E. coli beta-lactamase gene (bla) ampicillin resistance gene (apr/amp)</PDBx:details> <PDBx:end_seq xsi:nil="true" /> <PDBx:entry_id>111000111</PDBx:entry_id> <PDBx:start_seq xsi:nil="true" /> <PDBx:type>CDS</PDBx:type> </PDBx:pdbx_construct_feature> </PDBx:pdbx_construct_featureCategory></xsd:documentation> </xsd:annotation> <xsd:sequence> <xsd:element name="pdbx_construct_feature" minOccurs="0" maxOccurs="unbounded"> <xsd:complexType> <xsd:all> <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">Details that describe the feature</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="end_seq" minOccurs="0" maxOccurs="1" nillable="true"> <xsd:annotation> <xsd:documentation xml:lang="en">The sequence position at which the feature ends</xsd:documentation> </xsd:annotation> <xsd:simpleType> <xsd:restriction base="xsd:integer"> <xsd:minInclusive value="1"/> </xsd:restriction> </xsd:simpleType> </xsd:element> <xsd:element name="entry_id" minOccurs="1" maxOccurs="1" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">The value of attribute entry_id in category pdbx_construct_feature uniquely identifies a sample consisting of one or more proteins whose structure is to be determined. This is a pointer to attribute id in category entry. This item may be a site dependent bar code.</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="start_seq" minOccurs="0" maxOccurs="1" nillable="true"> <xsd:annotation> <xsd:documentation xml:lang="en">The sequence position at which the feature begins</xsd:documentation> </xsd:annotation> <xsd:simpleType> <xsd:restriction base="xsd:integer"> <xsd:minInclusive value="1"/> </xsd:restriction> </xsd:simpleType> </xsd:element> <xsd:element name="type" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">The type of the feature</xsd:documentation> </xsd:annotation> </xsd:element> </xsd:all> <xsd:attribute name="construct_id" use="required" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">The value of attribute construct_id in category pdbx_construct_feature uniquely identifies the construct with which the feature is associated. This is a pointer to attribute id in category pdbx_construct This item may be a site dependent bar code.</xsd:documentation> </xsd:annotation> </xsd:attribute> <xsd:attribute name="id" use="required" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">The value of attribute id in category pdbx_construct_feature must uniquely identify a record in the PDBX_CONSTRUCT_FEATURE list. Note that this item need not be a number; it can be any unique identifier.</xsd:documentation> </xsd:annotation> </xsd:attribute> </xsd:complexType> </xsd:element> </xsd:sequence> </xsd:complexType> |