PDBx:exptl_crystal_grow_compType

Data items in the EXPTL_CRYSTAL_GROW_COMP category record
details about the components of the solutions that were 'mixed'
(by whatever means) to produce the crystal.

In general, solution 1 is the solution that contains the
molecule to be crystallized and solution 2 is the solution
that contains the precipitant. However, the number of solutions
required to describe the crystallization protocol is not limited
to 2.

Details of the crystallization protocol should be given in
attribute details in category exptl_crystal_grow_comp using the solutions
 described in EXPTL_CRYSTAL_GROW_COMP.

    Example 1 - based on PDB entry 5HVP and laboratory records for the
                structure corresponding to PDB entry 5HVP.
<PDBx:exptl_crystal_grow_compCategory>
   <PDBx:exptl_crystal_grow_comp crystal_id="1" id="1">
      <PDBx:conc>6 mg/ml</PDBx:conc>
      <PDBx:details> The protein solution was in a buffer containing 25 mM NaCl,
100 mM NaMES/ MES buffer, pH 7.5, 3 mM NaAzide</PDBx:details>
      <PDBx:name>HIV-1 protease</PDBx:name>
      <PDBx:sol_id>1</PDBx:sol_id>
      <PDBx:volume>0.002 ml</PDBx:volume>
   </PDBx:exptl_crystal_grow_comp>
   <PDBx:exptl_crystal_grow_comp crystal_id="1" id="2">
      <PDBx:conc>4    M</PDBx:conc>
      <PDBx:details>in 3 mM NaAzide</PDBx:details>
      <PDBx:name>NaCl</PDBx:name>
      <PDBx:sol_id>2</PDBx:sol_id>
      <PDBx:volume>0.200 ml</PDBx:volume>
   </PDBx:exptl_crystal_grow_comp>
   <PDBx:exptl_crystal_grow_comp crystal_id="1" id="3">
      <PDBx:conc>100 mM</PDBx:conc>
      <PDBx:details>in 3 mM NaAzide</PDBx:details>
      <PDBx:name>Acetic Acid</PDBx:name>
      <PDBx:sol_id>2</PDBx:sol_id>
      <PDBx:volume>0.047 ml</PDBx:volume>
   </PDBx:exptl_crystal_grow_comp>
   <PDBx:exptl_crystal_grow_comp crystal_id="1" id="4">
      <PDBx:conc>100 mM</PDBx:conc>
      <PDBx:details> in 3 mM NaAzide. Buffer components were mixed to produce a
pH of 4.7 according to a ratio calculated from the pKa. The
actual pH of solution 2 was not measured.</PDBx:details>
      <PDBx:name>Na Acetate</PDBx:name>
      <PDBx:sol_id>2</PDBx:sol_id>
      <PDBx:volume>0.053 ml</PDBx:volume>
   </PDBx:exptl_crystal_grow_comp>
   <PDBx:exptl_crystal_grow_comp crystal_id="1" id="5">
      <PDBx:conc>neat</PDBx:conc>
      <PDBx:details>in 3 mM NaAzide</PDBx:details>
      <PDBx:name>water</PDBx:name>
      <PDBx:sol_id>2</PDBx:sol_id>
      <PDBx:volume>0.700 ml</PDBx:volume>
   </PDBx:exptl_crystal_grow_comp>
</PDBx:exptl_crystal_grow_compCategory>

Complex Type Information

Model

Used By

Source

<xsd:complexType name="exptl_crystal_grow_compType">
  <xsd:annotation>
    <xsd:documentation xml:lang="en">Data items in the EXPTL_CRYSTAL_GROW_COMP category record details about the components of the solutions that were 'mixed' (by whatever means) to produce the crystal. In general, solution 1 is the solution that contains the molecule to be crystallized and solution 2 is the solution that contains the precipitant. However, the number of solutions required to describe the crystallization protocol is not limited to 2. Details of the crystallization protocol should be given in attribute details in category exptl_crystal_grow_comp using the solutions described in EXPTL_CRYSTAL_GROW_COMP. Example 1 - based on PDB entry 5HVP and laboratory records for the structure corresponding to PDB entry 5HVP. <PDBx:exptl_crystal_grow_compCategory> <PDBx:exptl_crystal_grow_comp crystal_id="1" id="1"> <PDBx:conc>6 mg/ml</PDBx:conc> <PDBx:details> The protein solution was in a buffer containing 25 mM NaCl, 100 mM NaMES/ MES buffer, pH 7.5, 3 mM NaAzide</PDBx:details> <PDBx:name>HIV-1 protease</PDBx:name> <PDBx:sol_id>1</PDBx:sol_id> <PDBx:volume>0.002 ml</PDBx:volume> </PDBx:exptl_crystal_grow_comp> <PDBx:exptl_crystal_grow_comp crystal_id="1" id="2"> <PDBx:conc>4 M</PDBx:conc> <PDBx:details>in 3 mM NaAzide</PDBx:details> <PDBx:name>NaCl</PDBx:name> <PDBx:sol_id>2</PDBx:sol_id> <PDBx:volume>0.200 ml</PDBx:volume> </PDBx:exptl_crystal_grow_comp> <PDBx:exptl_crystal_grow_comp crystal_id="1" id="3"> <PDBx:conc>100 mM</PDBx:conc> <PDBx:details>in 3 mM NaAzide</PDBx:details> <PDBx:name>Acetic Acid</PDBx:name> <PDBx:sol_id>2</PDBx:sol_id> <PDBx:volume>0.047 ml</PDBx:volume> </PDBx:exptl_crystal_grow_comp> <PDBx:exptl_crystal_grow_comp crystal_id="1" id="4"> <PDBx:conc>100 mM</PDBx:conc> <PDBx:details> in 3 mM NaAzide. Buffer components were mixed to produce a pH of 4.7 according to a ratio calculated from the pKa. The actual pH of solution 2 was not measured.</PDBx:details> <PDBx:name>Na Acetate</PDBx:name> <PDBx:sol_id>2</PDBx:sol_id> <PDBx:volume>0.053 ml</PDBx:volume> </PDBx:exptl_crystal_grow_comp> <PDBx:exptl_crystal_grow_comp crystal_id="1" id="5"> <PDBx:conc>neat</PDBx:conc> <PDBx:details>in 3 mM NaAzide</PDBx:details> <PDBx:name>water</PDBx:name> <PDBx:sol_id>2</PDBx:sol_id> <PDBx:volume>0.700 ml</PDBx:volume> </PDBx:exptl_crystal_grow_comp> </PDBx:exptl_crystal_grow_compCategory></xsd:documentation>
  </xsd:annotation>
  <xsd:sequence>
    <xsd:element name="exptl_crystal_grow_comp" minOccurs="0" maxOccurs="unbounded">
      <xsd:complexType>
        <xsd:all>
          <xsd:element name="conc" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The concentration of the solution component. 200 \ml 0.1 ml</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A description of any special aspects of the solution component. When the solution component is the one that contains the macromolecule, this could be the specification of the buffer in which the macromolecule was stored. When the solution component is a buffer component, this could be the methods (or formula) used to achieve a desired pH. in 3 mM NaAzide The protein solution was in a buffer containing 25 mM NaCl, 100 mM NaMES/MES buffer, pH 7.5, 3 mM NaAzide in 3 mM NaAzide. Buffer components were mixed to produce a pH of 4.7 according to a ratio calculated from the pKa. The actual pH of solution 2 was not measured.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="name" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A common name for the component of the solution. protein in buffer acetic acid</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="sol_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">An identifier for the solution to which the given solution component belongs. 1 well solution solution A</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="volume" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The volume of the solution component. 200 \ml 0.1 ml</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
        </xsd:all>
        <xsd:attribute name="crystal_id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category exptl_crystal in the EXPTL_CRYSTAL category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">The value of attribute id in category exptl_crystal_grow_comp must uniquely identify each item in the EXPTL_CRYSTAL_GROW_COMP list. Note that this item need not be a number; it can be any unique identifier. 1 A protein in buffer</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:complexType>
    </xsd:element>
  </xsd:sequence>
</xsd:complexType>