PDBx:entity_src_natType

Data items in the ENTITY_SRC_NAT category record details of
the source from which the entity was obtained in cases
where the entity was isolated directly from a natural tissue.

    Example 1 - based on PDB entry 5HVP and laboratory records for the
                structure corresponding to PDB entry 5HVP.
<PDBx:entity_src_natCategory>
   <PDBx:entity_src_nat entity_id="2" pdbx_src_id="1">
      <PDBx:common_name>bacteria</PDBx:common_name>
      <PDBx:details>    Acetyl-pepstatin was isolated by Dr. K. Oda, Osaka
Prefecture University, and provided to us by Dr. Ben
Dunn, University of Florida, and Dr. J. Kay, University
of Wales.</PDBx:details>
      <PDBx:genus>Actinomycetes</PDBx:genus>
   </PDBx:entity_src_nat>
</PDBx:entity_src_natCategory>

Complex Type Information

Model

Used By

Source

<xsd:complexType name="entity_src_natType">
  <xsd:annotation>
    <xsd:documentation xml:lang="en">Data items in the ENTITY_SRC_NAT category record details of the source from which the entity was obtained in cases where the entity was isolated directly from a natural tissue. Example 1 - based on PDB entry 5HVP and laboratory records for the structure corresponding to PDB entry 5HVP. <PDBx:entity_src_natCategory> <PDBx:entity_src_nat entity_id="2" pdbx_src_id="1"> <PDBx:common_name>bacteria</PDBx:common_name> <PDBx:details> Acetyl-pepstatin was isolated by Dr. K. Oda, Osaka Prefecture University, and provided to us by Dr. Ben Dunn, University of Florida, and Dr. J. Kay, University of Wales.</PDBx:details> <PDBx:genus>Actinomycetes</PDBx:genus> </PDBx:entity_src_nat> </PDBx:entity_src_natCategory></xsd:documentation>
  </xsd:annotation>
  <xsd:sequence>
    <xsd:element name="entity_src_nat" minOccurs="0" maxOccurs="unbounded">
      <xsd:complexType>
        <xsd:all>
          <xsd:element name="common_name" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The common name of the organism from which the entity was isolated. man yeast bacteria</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A description of special aspects of the organism from which the entity was isolated.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="genus" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The genus of the organism from which the entity was isolated. Homo Saccharomyces Escherichia</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_alt_source_flag" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">This data item identifies cases in which an alternative source modeled.</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:string">
                <xsd:enumeration value="sample"/>
                <xsd:enumeration value="model"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
          <xsd:element name="pdbx_atcc" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Americal Tissue Culture Collection number. 6051</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_beg_seq_num" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:integer">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The beginning polymer sequence position for the polymer section corresponding to this source. A reference to the sequence position in the entity_poly category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_cell" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A particular cell type. BHK-21</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_cell_line" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The specific line of cells. HELA</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_cellular_location" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Identifies the location inside (or outside) the cell.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_end_seq_num" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:integer">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The ending polymer sequence position for the polymer section corresponding to this source. A reference to the sequence position in the entity_poly category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_fragment" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A domain or fragment of the molecule.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_ncbi_taxonomy_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">NCBI Taxonomy identifier for the source organism. Reference: Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA (2000). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2000 Jan 1;28(1):10-4 Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL (2000). GenBank. Nucleic Acids Res 2000 Jan 1;28(1):15-18.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_organ" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Organized group of tissues that carries on a specialized function. KIDNEY</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_organelle" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Organized structure within cell. MITOCHONDRIA</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_organism_scientific" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Scientific name of the organism of the natural source. BOS TAURUS SUS SCROFA ASPERGILLUS ORYZAE</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_plasmid_details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Details about the plasmid. PLC28 DERIVATIVE</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_plasmid_name" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The plasmid containing the gene. pB322</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_secretion" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Identifies the secretion from which the molecule was isolated. saliva urine venom</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="pdbx_variant" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Identifies the variant.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="species" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The species of the organism from which the entity was isolated. sapiens cerevisiae coli</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="strain" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The strain of the organism from which the entity was isolated. DH5a BMH 71-18</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="tissue" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The tissue of the organism from which the entity was isolated. heart liver eye lens</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="tissue_fraction" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The subcellular fraction of the tissue of the organism from which the entity was isolated. mitochondria nucleus membrane</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
        </xsd:all>
        <xsd:attribute name="entity_id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category entity in the ENTITY category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="pdbx_src_id" use="required" type="xsd:integer">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is an ordinal identifier for entity_src_nat data records.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:complexType>
    </xsd:element>
  </xsd:sequence>
</xsd:complexType>