PDBx:em_virus_entityType

Data items in the EM_VIRUS_ENTITY category record details
of the icosahedral virus.
 Example 1 - based on PDB entry 1DYL and laboratory records for the
             structure corresponding to PDB entry 1DYL
<PDBx:em_virus_entityCategory>
   <PDBx:em_virus_entity entity_assembly_id="1" id="1">
      <PDBx:empty>NO</PDBx:empty>
      <PDBx:enveloped>YES</PDBx:enveloped>
      <PDBx:ictvdb_id>00.073.0.01.023</PDBx:ictvdb_id>
      <PDBx:virus_host_category>VERTERBRATES</PDBx:virus_host_category>
      <PDBx:virus_host_species>HOMO SAPIENS</PDBx:virus_host_species>
      <PDBx:virus_isolate>STRAIN</PDBx:virus_isolate>
      <PDBx:virus_type>VIRUS</PDBx:virus_type>
   </PDBx:em_virus_entity>
</PDBx:em_virus_entityCategory>

Complex Type Information

Model

Used By

Source

<xsd:complexType name="em_virus_entityType">
  <xsd:annotation>
    <xsd:documentation xml:lang="en">Data items in the EM_VIRUS_ENTITY category record details of the icosahedral virus. Example 1 - based on PDB entry 1DYL and laboratory records for the structure corresponding to PDB entry 1DYL <PDBx:em_virus_entityCategory> <PDBx:em_virus_entity entity_assembly_id="1" id="1"> <PDBx:empty>NO</PDBx:empty> <PDBx:enveloped>YES</PDBx:enveloped> <PDBx:ictvdb_id>00.073.0.01.023</PDBx:ictvdb_id> <PDBx:virus_host_category>VERTERBRATES</PDBx:virus_host_category> <PDBx:virus_host_species>HOMO SAPIENS</PDBx:virus_host_species> <PDBx:virus_isolate>STRAIN</PDBx:virus_isolate> <PDBx:virus_type>VIRUS</PDBx:virus_type> </PDBx:em_virus_entity> </PDBx:em_virus_entityCategory></xsd:documentation>
  </xsd:annotation>
  <xsd:sequence>
    <xsd:element name="em_virus_entity" minOccurs="0" maxOccurs="unbounded">
      <xsd:complexType>
        <xsd:all>
          <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Additional details about this virus entity</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="empty" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Flag to indicate if the virus is empty or not.</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:string">
                <xsd:enumeration value="YES"/>
                <xsd:enumeration value="NO"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
          <xsd:element name="enveloped" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Flag to indicate if the virus is enveloped or not.</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:string">
                <xsd:enumeration value="YES"/>
                <xsd:enumeration value="NO"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
          <xsd:element name="ictvdb_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The International Committee on Taxonomy of Viruses (ICTV) Taxon Identifier is the Virus Code used throughout the ICTV database (ICTVdb). The ICTVdb id is the appropriate identifier used by the International Committee on Taxonomy of Viruses Resource. Reference: Virus Taxonomy, Academic Press (1999). ISBN:0123702003. NL-54</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="virus_host_category" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The host category description for the virus. ALGAE ARCHAEA BACTERIA(EUBACTERIA) FUNGI INVERTEBRATES PLANTAE (HIGHER PLANTS) PROTOZOA VERTEBRATES</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="virus_host_growth_cell" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The host cell from which the virus was isolated. HELA CHO</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="virus_host_species" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The host species from which the virus was isolated. homo sapiens gallus gallus</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="virus_isolate" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The isolate from which the virus was obtained.</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:string">
                <xsd:enumeration value="STRAIN"/>
                <xsd:enumeration value="SEROTYPE"/>
                <xsd:enumeration value="SEROCOMPLEX"/>
                <xsd:enumeration value="SUBSPECIES"/>
                <xsd:enumeration value="SPECIES"/>
                <xsd:enumeration value="OTHER"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
          <xsd:element name="virus_type" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The type of virus. VIRION SATELLITE PRION VIROID VIRUS-LIKE PARTICLE</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
        </xsd:all>
        <xsd:attribute name="entity_assembly_id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category em_virus_entity in the ENTITY_ASSEMBLY category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">Is the unique identifier for VIRUS_ENTITY category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:complexType>
    </xsd:element>
  </xsd:sequence>
</xsd:complexType>