PDBx:em_image_scansType

Data items in the EM_IMAGE_SCANS category record details
of the image scanning device (microdensitometer)
and parameters for digitization of the image.
  Example 1 - based on PDB entry 1DYL and laboratory records for the
                structure corresponding to PDB entry 1DYL
<PDBx:em_image_scansCategory>
   <PDBx:em_image_scans entry_id="1DYL" id="2">
      <PDBx:citation_id>1</PDBx:citation_id>
      <PDBx:details xsi:nil="true" />
      <PDBx:number_digital_images>48</PDBx:number_digital_images>
      <PDBx:od_range xsi:nil="true" />
      <PDBx:quant_bit_size xsi:nil="true" />
      <PDBx:sampling_size xsi:nil="true" />
      <PDBx:scanner_model xsi:nil="true" />
   </PDBx:em_image_scans>
</PDBx:em_image_scansCategory>

Complex Type Information

Model

Used By

Source

<xsd:complexType name="em_image_scansType">
  <xsd:annotation>
    <xsd:documentation xml:lang="en">Data items in the EM_IMAGE_SCANS category record details of the image scanning device (microdensitometer) and parameters for digitization of the image. Example 1 - based on PDB entry 1DYL and laboratory records for the structure corresponding to PDB entry 1DYL <PDBx:em_image_scansCategory> <PDBx:em_image_scans entry_id="1DYL" id="2"> <PDBx:citation_id>1</PDBx:citation_id> <PDBx:details xsi:nil="true" /> <PDBx:number_digital_images>48</PDBx:number_digital_images> <PDBx:od_range xsi:nil="true" /> <PDBx:quant_bit_size xsi:nil="true" /> <PDBx:sampling_size xsi:nil="true" /> <PDBx:scanner_model xsi:nil="true" /> </PDBx:em_image_scans> </PDBx:em_image_scansCategory></xsd:documentation>
  </xsd:annotation>
  <xsd:sequence>
    <xsd:element name="em_image_scans" minOccurs="0" maxOccurs="unbounded">
      <xsd:complexType>
        <xsd:all>
          <xsd:element name="citation_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category citation in the CITATION category.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">Any additional details about scanning images.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="number_digital_images" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:integer">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The number of images scanned and digitised.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="od_range" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The optical density range (OD=-log 10 transmission). To the eye OD=1 appears light grey and OD=3 is opaque. 1.4</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="quant_bit_size" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:integer">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The number of bits per pixel. 8</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="sampling_size" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The sampling step size (microns) set on the scanner.</xsd:documentation>
            </xsd:annotation>
            <xsd:complexType>
              <xsd:simpleContent>
                <xsd:extension base="xsd:decimal">
                  <xsd:attribute fixed="microns" name="units" type="xsd:string" use="optional"/>
                </xsd:extension>
              </xsd:simpleContent>
            </xsd:complexType>
          </xsd:element>
          <xsd:element name="scanner_model" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The scanner model.</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:string">
                <xsd:enumeration value="ZEISS SCAI"/>
                <xsd:enumeration value="EMIL 10"/>
                <xsd:enumeration value="OPTRONICS"/>
                <xsd:enumeration value="PERKIN ELMER"/>
                <xsd:enumeration value="TEMSCAN"/>
                <xsd:enumeration value="EIKONIX IEEE 488"/>
                <xsd:enumeration value="NIKON COOLSCAN"/>
                <xsd:enumeration value="NIKON SUPER COOLSCAN 9000"/>
                <xsd:enumeration value="IMAGE SCIENCE PATCHWORK DENSITOMETER"/>
                <xsd:enumeration value="PATCHWORK DENSITOMETER"/>
                <xsd:enumeration value="PRIMESCAN"/>
                <xsd:enumeration value="OTHER"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
        </xsd:all>
        <xsd:attribute name="entry_id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category entry in the ENTRY category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">The value of attribute id in category em_image_scans must uniquely identify the images scanned.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:complexType>
    </xsd:element>
  </xsd:sequence>
</xsd:complexType>