Data items in the EM_IMAGE_SCANS category record details of the image scanning device (microdensitometer) and parameters for digitization of the image. Example 1 - based on PDB entry 1DYL and laboratory records for the structure corresponding to PDB entry 1DYL <PDBx:em_image_scansCategory> <PDBx:em_image_scans entry_id="1DYL" id="2"> <PDBx:citation_id>1</PDBx:citation_id> <PDBx:details xsi:nil="true" /> <PDBx:number_digital_images>48</PDBx:number_digital_images> <PDBx:od_range xsi:nil="true" /> <PDBx:quant_bit_size xsi:nil="true" /> <PDBx:sampling_size xsi:nil="true" /> <PDBx:scanner_model xsi:nil="true" /> </PDBx:em_image_scans> </PDBx:em_image_scansCategory> |
<xsd:complexType name="em_image_scansType"> <xsd:annotation> <xsd:documentation xml:lang="en">Data items in the EM_IMAGE_SCANS category record details of the image scanning device (microdensitometer) and parameters for digitization of the image. Example 1 - based on PDB entry 1DYL and laboratory records for the structure corresponding to PDB entry 1DYL <PDBx:em_image_scansCategory> <PDBx:em_image_scans entry_id="1DYL" id="2"> <PDBx:citation_id>1</PDBx:citation_id> <PDBx:details xsi:nil="true" /> <PDBx:number_digital_images>48</PDBx:number_digital_images> <PDBx:od_range xsi:nil="true" /> <PDBx:quant_bit_size xsi:nil="true" /> <PDBx:sampling_size xsi:nil="true" /> <PDBx:scanner_model xsi:nil="true" /> </PDBx:em_image_scans> </PDBx:em_image_scansCategory></xsd:documentation> </xsd:annotation> <xsd:sequence> <xsd:element name="em_image_scans" minOccurs="0" maxOccurs="unbounded"> <xsd:complexType> <xsd:all> <xsd:element name="citation_id" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category citation in the CITATION category.</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">Any additional details about scanning images.</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="number_digital_images" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:integer"> <xsd:annotation> <xsd:documentation xml:lang="en">The number of images scanned and digitised.</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="od_range" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:decimal"> <xsd:annotation> <xsd:documentation xml:lang="en">The optical density range (OD=-log 10 transmission). To the eye OD=1 appears light grey and OD=3 is opaque. 1.4</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="quant_bit_size" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:integer"> <xsd:annotation> <xsd:documentation xml:lang="en">The number of bits per pixel. 8</xsd:documentation> </xsd:annotation> </xsd:element> <xsd:element name="sampling_size" minOccurs="0" maxOccurs="1" nillable="true"> <xsd:annotation> <xsd:documentation xml:lang="en">The sampling step size (microns) set on the scanner.</xsd:documentation> </xsd:annotation> <xsd:complexType> <xsd:simpleContent> <xsd:extension base="xsd:decimal"> <xsd:attribute fixed="microns" name="units" type="xsd:string" use="optional"/> </xsd:extension> </xsd:simpleContent> </xsd:complexType> </xsd:element> <xsd:element name="scanner_model" minOccurs="0" maxOccurs="1" nillable="true"> <xsd:annotation> <xsd:documentation xml:lang="en">The scanner model.</xsd:documentation> </xsd:annotation> <xsd:simpleType> <xsd:restriction base="xsd:string"> <xsd:enumeration value="ZEISS SCAI"/> <xsd:enumeration value="EMIL 10"/> <xsd:enumeration value="OPTRONICS"/> <xsd:enumeration value="PERKIN ELMER"/> <xsd:enumeration value="TEMSCAN"/> <xsd:enumeration value="EIKONIX IEEE 488"/> <xsd:enumeration value="NIKON COOLSCAN"/> <xsd:enumeration value="NIKON SUPER COOLSCAN 9000"/> <xsd:enumeration value="IMAGE SCIENCE PATCHWORK DENSITOMETER"/> <xsd:enumeration value="PATCHWORK DENSITOMETER"/> <xsd:enumeration value="PRIMESCAN"/> <xsd:enumeration value="OTHER"/> </xsd:restriction> </xsd:simpleType> </xsd:element> </xsd:all> <xsd:attribute name="entry_id" use="required" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category entry in the ENTRY category.</xsd:documentation> </xsd:annotation> </xsd:attribute> <xsd:attribute name="id" use="required" type="xsd:string"> <xsd:annotation> <xsd:documentation xml:lang="en">The value of attribute id in category em_image_scans must uniquely identify the images scanned.</xsd:documentation> </xsd:annotation> </xsd:attribute> </xsd:complexType> </xsd:element> </xsd:sequence> </xsd:complexType> |