PDBx:em_assemblyType

Data items in the EM_ASSEMBLY category record details
about the type of complex assembly that describes the
nature of the sample studied.
 Example 1 - based on PDB entry 1DYL and laboratory records for the
                structure corresponding to PDB entry 1DYL
<PDBx:em_assemblyCategory>
   <PDBx:em_assembly entry_id="1DYL" id="1">
      <PDBx:aggregation_state>PARTICLE</PDBx:aggregation_state>
      <PDBx:composition>virus</PDBx:composition>
      <PDBx:details xsi:nil="true" />
      <PDBx:mol_wt_exp xsi:nil="true" />
      <PDBx:mol_wt_method xsi:nil="true" />
      <PDBx:mol_wt_theo xsi:nil="true" />
      <PDBx:name>virus</PDBx:name>
      <PDBx:num_components>1</PDBx:num_components>
   </PDBx:em_assembly>
</PDBx:em_assemblyCategory>

Complex Type Information

Model

Used By

Source

<xsd:complexType name="em_assemblyType">
  <xsd:annotation>
    <xsd:documentation xml:lang="en">Data items in the EM_ASSEMBLY category record details about the type of complex assembly that describes the nature of the sample studied. Example 1 - based on PDB entry 1DYL and laboratory records for the structure corresponding to PDB entry 1DYL <PDBx:em_assemblyCategory> <PDBx:em_assembly entry_id="1DYL" id="1"> <PDBx:aggregation_state>PARTICLE</PDBx:aggregation_state> <PDBx:composition>virus</PDBx:composition> <PDBx:details xsi:nil="true" /> <PDBx:mol_wt_exp xsi:nil="true" /> <PDBx:mol_wt_method xsi:nil="true" /> <PDBx:mol_wt_theo xsi:nil="true" /> <PDBx:name>virus</PDBx:name> <PDBx:num_components>1</PDBx:num_components> </PDBx:em_assembly> </PDBx:em_assemblyCategory></xsd:documentation>
  </xsd:annotation>
  <xsd:sequence>
    <xsd:element name="em_assembly" minOccurs="0" maxOccurs="unbounded">
      <xsd:complexType>
        <xsd:all>
          <xsd:element name="aggregation_state" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A description of the aggregation state of the assembly. 2D CRYSTAL 3D CRYSTAL FILAMENT PARTICLE TISSUE CELL</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:string">
                <xsd:enumeration value="2D CRYSTAL"/>
                <xsd:enumeration value="3D CRYSTAL"/>
                <xsd:enumeration value="INDIVIDUAL STRUCTURE"/>
                <xsd:enumeration value="FILAMENT"/>
                <xsd:enumeration value="ICOSAHEDRAL"/>
                <xsd:enumeration value="PARTICLE"/>
                <xsd:enumeration value="TISSUE"/>
                <xsd:enumeration value="CELL"/>
                <xsd:enumeration value="HELICAL CRYSTAL"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
          <xsd:element name="composition" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The known composition of the assembly.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="details" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">A description of any additional details describing the observed sample. This sample was monodisperse.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="mol_wt_exp" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The value (in megadaltons) of the experimentally determined molecular weight of the assembly.</xsd:documentation>
            </xsd:annotation>
            <xsd:complexType>
              <xsd:simpleContent>
                <xsd:extension base="xsd:decimal">
                  <xsd:attribute fixed="megadaltons" name="units" type="xsd:string" use="optional"/>
                </xsd:extension>
              </xsd:simpleContent>
            </xsd:complexType>
          </xsd:element>
          <xsd:element name="mol_wt_method" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The method used in determining the molecular weight.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="mol_wt_theo" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The value (in megadaltons) of the theoretically determined molecular weight of the assembly.</xsd:documentation>
            </xsd:annotation>
            <xsd:complexType>
              <xsd:simpleContent>
                <xsd:extension base="xsd:decimal">
                  <xsd:attribute fixed="megadaltons" name="units" type="xsd:string" use="optional"/>
                </xsd:extension>
              </xsd:simpleContent>
            </xsd:complexType>
          </xsd:element>
          <xsd:element name="name" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:string">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The name of the assembly of observed complexes. Fab Fragment of Mab1-Ia monoclonal antibody bound to Human Rhinovirus1h Nim-Ia Site</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element name="num_components" minOccurs="0" maxOccurs="1" nillable="true" type="xsd:integer">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The number of components of the biological assembly.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
        </xsd:all>
        <xsd:attribute name="entry_id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is a pointer to attribute id in category entry in the ENTRY category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="id" use="required" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">The value of attribute id in category em_assembly must uniquely identify a collection of observed complexes.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:complexType>
    </xsd:element>
  </xsd:sequence>
</xsd:complexType>