PDBx:chemical_conn_bondType

Data items in the CHEMICAL_CONN_BOND category would not, in
general, be used in a macromolecular CIF. See instead the
ENTITY data items.

Data items in the CHEMICAL_CONN_ATOM and CHEMICAL_CONN_BOND
categories record details about the two-dimensional (2D)
chemical structure of the molecular species. They allow a
2D chemical diagram to be reconstructed for use in a
publication or in a database search for structural and
substructural relationships.

The CHEMICAL_CONN_BOND data items specify the connections
between the atoms in the CHEMICAL_CONN_ATOM list and the nature
of the chemical bond between these atoms.

    Example 1 - based on data set DPTD of Yamin, Suwandi, Fun, Sivakumar &
                bin Shawkataly [Acta Cryst. (1996), C52, 951-953].
<PDBx:chemical_conn_bondCategory>
   <PDBx:chemical_conn_bond atom_1="4" atom_2="1">
      <PDBx:type>doub</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="4" atom_2="3">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="4" atom_2="2">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="5" atom_2="3">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="6" atom_2="5">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="7" atom_2="6">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="8" atom_2="7">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="8" atom_2="3">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="10" atom_2="2">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="12" atom_2="9">
      <PDBx:type>doub</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="12" atom_2="11">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="12" atom_2="10">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="13" atom_2="11">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="14" atom_2="13">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="15" atom_2="14">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="16" atom_2="15">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="16" atom_2="11">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="17" atom_2="5">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="18" atom_2="5">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="19" atom_2="6">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="20" atom_2="6">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="21" atom_2="7">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="22" atom_2="7">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="23" atom_2="8">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="24" atom_2="8">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="25" atom_2="13">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="26" atom_2="13">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="27" atom_2="14">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="28" atom_2="14">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="29" atom_2="15">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="30" atom_2="15">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="31" atom_2="16">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
   <PDBx:chemical_conn_bond atom_1="32" atom_2="16">
      <PDBx:type>sing</PDBx:type>
   </PDBx:chemical_conn_bond>
</PDBx:chemical_conn_bondCategory>

Complex Type Information

Model

Used By

Source

<xsd:complexType name="chemical_conn_bondType">
  <xsd:annotation>
    <xsd:documentation xml:lang="en">Data items in the CHEMICAL_CONN_BOND category would not, in general, be used in a macromolecular CIF. See instead the ENTITY data items. Data items in the CHEMICAL_CONN_ATOM and CHEMICAL_CONN_BOND categories record details about the two-dimensional (2D) chemical structure of the molecular species. They allow a 2D chemical diagram to be reconstructed for use in a publication or in a database search for structural and substructural relationships. The CHEMICAL_CONN_BOND data items specify the connections between the atoms in the CHEMICAL_CONN_ATOM list and the nature of the chemical bond between these atoms. Example 1 - based on data set DPTD of Yamin, Suwandi, Fun, Sivakumar & bin Shawkataly [Acta Cryst. (1996), C52, 951-953]. <PDBx:chemical_conn_bondCategory> <PDBx:chemical_conn_bond atom_1="4" atom_2="1"> <PDBx:type>doub</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="4" atom_2="3"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="4" atom_2="2"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="5" atom_2="3"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="6" atom_2="5"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="7" atom_2="6"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="8" atom_2="7"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="8" atom_2="3"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="10" atom_2="2"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="12" atom_2="9"> <PDBx:type>doub</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="12" atom_2="11"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="12" atom_2="10"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="13" atom_2="11"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="14" atom_2="13"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="15" atom_2="14"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="16" atom_2="15"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="16" atom_2="11"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="17" atom_2="5"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="18" atom_2="5"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="19" atom_2="6"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="20" atom_2="6"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="21" atom_2="7"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="22" atom_2="7"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="23" atom_2="8"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="24" atom_2="8"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="25" atom_2="13"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="26" atom_2="13"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="27" atom_2="14"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="28" atom_2="14"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="29" atom_2="15"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="30" atom_2="15"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="31" atom_2="16"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> <PDBx:chemical_conn_bond atom_1="32" atom_2="16"> <PDBx:type>sing</PDBx:type> </PDBx:chemical_conn_bond> </PDBx:chemical_conn_bondCategory></xsd:documentation>
  </xsd:annotation>
  <xsd:sequence>
    <xsd:element name="chemical_conn_bond" minOccurs="0" maxOccurs="unbounded">
      <xsd:complexType>
        <xsd:all>
          <xsd:element name="type" minOccurs="0" maxOccurs="1" nillable="true">
            <xsd:annotation>
              <xsd:documentation xml:lang="en">The chemical bond type associated with the connection between the two sites attribute atom_1 in category chemical_conn_bond and attribute atom_2 in category chemical_conn_bond.</xsd:documentation>
            </xsd:annotation>
            <xsd:simpleType>
              <xsd:restriction base="xsd:string">
                <xsd:enumeration value="sing"/>
                <xsd:enumeration value="doub"/>
                <xsd:enumeration value="trip"/>
                <xsd:enumeration value="quad"/>
                <xsd:enumeration value="arom"/>
                <xsd:enumeration value="poly"/>
                <xsd:enumeration value="delo"/>
                <xsd:enumeration value="pi"/>
              </xsd:restriction>
            </xsd:simpleType>
          </xsd:element>
        </xsd:all>
        <xsd:attribute name="atom_1" use="required" type="xsd:integer">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is a pointer to attribute number in category chemical_conn_atom in the CHEMICAL_CONN_ATOM category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="atom_2" use="required" type="xsd:integer">
          <xsd:annotation>
            <xsd:documentation xml:lang="en">This data item is a pointer to attribute number in category chemical_conn_atom in the CHEMICAL_CONN_ATOM category.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:complexType>
    </xsd:element>
  </xsd:sequence>
</xsd:complexType>