NeXML [NeXML]

Schema Information

Version
1.0
Category
DocumentFormat
Namespace
Description
an XML representation of the NeXus data format for phylogenetic data.
Publication
2009
Copyright
© 2017 GitHub, Inc.

attributes

  1. AAChar_codon
  2. AAChar_id
  3. AAChar_states
  4. AAChar_tokens
  5. AAObs_char
  6. AAObs_state
  7. AAPolymorphicStateSet_symbol
  8. AAState_symbol
  9. AAUncertainStateSet_symbol
  10. AbstractChar_codon
  11. AbstractChar_states
  12. AbstractChar_tokens
  13. AbstractEdge_length
  14. AbstractEdge_source
  15. AbstractEdge_target
  16. AbstractMapping_state
  17. AbstractNode_root
  18. AbstractObs_char
  19. AbstractObs_state
  20. AbstractRootEdge_length
  21. AbstractRootEdge_target
  22. AbstractState_symbol
  23. Annotated_about
  24. CellSet_cell
  25. CharSet_char
  26. ContinuousChar_codon
  27. ContinuousChar_states
  28. ContinuousChar_tokens
  29. ContinuousObs_char
  30. ContinuousObs_state
  31. DNAChar_codon
  32. DNAChar_id
  33. DNAChar_states
  34. DNAChar_tokens
  35. DNAObs_char
  36. DNAObs_state
  37. DNAPolymorphicStateSet_symbol
  38. DNAState_symbol
  39. DNAUncertainStateSet_symbol
  40. IDTagged_id
  41. Labelled_label
  42. LiteralMeta_content
  43. LiteralMeta_datatype
  44. LiteralMeta_property
  45. NetworkFloatEdge_length
  46. NetworkIntEdge_length
  47. Nexml_generator
  48. Nexml_version
  49. NodeAndRootEdgeAndEdgeSet_edge
  50. NodeAndRootEdgeAndEdgeSet_node
  51. NodeAndRootEdgeAndEdgeSet_rootedge
  52. OptionalTaxonLinked_otu
  53. RNAChar_codon
  54. RNAChar_id
  55. RNAChar_states
  56. RNAChar_tokens
  57. RNAObs_char
  58. RNAObs_state
  59. RNAPolymorphicStateSet_symbol
  60. RNAState_symbol
  61. RNAUncertainStateSet_symbol
  62. ResourceMeta_href
  63. ResourceMeta_rel
  64. RestrictionChar_codon
  65. RestrictionChar_id
  66. RestrictionChar_states
  67. RestrictionChar_tokens
  68. RestrictionObs_char
  69. RestrictionObs_state
  70. RestrictionState_symbol
  71. RowSet_row
  72. StandardChar_codon
  73. StandardChar_id
  74. StandardChar_states
  75. StandardChar_tokens
  76. StandardObs_char
  77. StandardObs_state
  78. StandardState_symbol
  79. StandardUncertainStateSet_symbol
  80. StateSet_polymorphic_state_set
  81. StateSet_state
  82. StateSet_uncertain_state_set
  83. TaxaLinked_otus
  84. TaxonLinked_otu
  85. TaxonSet_otu
  86. TreeAndNetworkSet_network
  87. TreeAndNetworkSet_tree
  88. TreeFloatEdge_length
  89. TreeFloatRootEdge_length
  90. TreeIntEdge_length
  91. TreeIntRootEdge_length
  92. actuate
  93. arcLink_type
  94. arcrole
  95. base_ns.w3.org_XML_1998_namespace_base
  96. emptyLink_type
  97. extendedLink_type
  98. from
  99. href
  100. id
  101. label
  102. lang
  103. liftingSchemaMapping
  104. locatorLink_type
  105. loweringSchemaMapping
  106. modelReference
  107. resourceLink_type
  108. role
  109. show
  110. simpleLink_type
  111. space
  112. title
  113. titleLink_type
  114. to

attributeGroups

  1. arcLink
  2. emptyLink
  3. extendedLink
  4. locatorLink
  5. resourceLink
  6. simpleLink
  7. specialAttrs
  8. titleLink

complexTypes

  1. AAChar
  2. AAFormat
  3. AAMapping
  4. AAMatrixObsRow
  5. AAMatrixSeqRow
  6. AAObs
  7. AAObsMatrix
  8. AAPolymorphicStateSet
  9. AASeqMatrix
  10. AAState
  11. AAStates
  12. AAUncertainStateSet
  13. AbstractBlock
  14. AbstractCells
  15. AbstractChar
  16. AbstractEdge
  17. AbstractFormat
  18. AbstractMapping
  19. AbstractNetwork
  20. AbstractNode
  21. AbstractObs
  22. AbstractObsMatrix
  23. AbstractObsRow
  24. AbstractPolymorphicStateSet
  25. AbstractRootEdge
  26. AbstractSeqMatrix
  27. AbstractSeqRow
  28. AbstractSeqs
  29. AbstractSet
  30. AbstractState
  31. AbstractStates
  32. AbstractTree
  33. AbstractTrees
  34. AbstractUncertainStateSet
  35. Annotated
  36. Base
  37. CellSet
  38. CharSet
  39. ContinuousCells
  40. ContinuousChar
  41. ContinuousFormat
  42. ContinuousMatrixObsRow
  43. ContinuousMatrixSeqRow
  44. ContinuousObs
  45. ContinuousObsMatrix
  46. ContinuousSeqMatrix
  47. ContinuousSeqs
  48. DNAChar
  49. DNAFormat
  50. DNAMapping
  51. DNAMatrixObsRow
  52. DNAMatrixSeqRow
  53. DNAObs
  54. DNAObsMatrix
  55. DNAPolymorphicStateSet
  56. DNASeqMatrix
  57. DNAState
  58. DNAStates
  59. DNAUncertainStateSet
  60. DnaCells
  61. DnaSeqs
  62. FloatNetwork
  63. FloatTree
  64. IDTagged
  65. IntNetwork
  66. IntTree
  67. Labelled
  68. LiteralMeta
  69. Meta
  70. NetworkFloatEdge
  71. NetworkIntEdge
  72. NetworkNode
  73. Nexml
  74. NodeAndRootEdgeAndEdgeSet
  75. OptionalTaxonLinked
  76. ProteinCells
  77. ProteinSeqs
  78. RNAChar
  79. RNAFormat
  80. RNAMapping
  81. RNAMatrixObsRow
  82. RNAMatrixSeqRow
  83. RNAObs
  84. RNAObsMatrix
  85. RNAPolymorphicStateSet
  86. RNASeqMatrix
  87. RNAState
  88. RNAStates
  89. RNAUncertainStateSet
  90. ResourceMeta
  91. RestrictionCells
  92. RestrictionChar
  93. RestrictionFormat
  94. RestrictionMatrixObsRow
  95. RestrictionMatrixSeqRow
  96. RestrictionObs
  97. RestrictionObsMatrix
  98. RestrictionSeqMatrix
  99. RestrictionSeqs
  100. RestrictionState
  101. RestrictionStates
  102. RnaCells
  103. RnaSeqs
  104. RowSet
  105. StandardCells
  106. StandardChar
  107. StandardFormat
  108. StandardMapping
  109. StandardMatrixObsRow
  110. StandardMatrixSeqRow
  111. StandardObs
  112. StandardObsMatrix
  113. StandardPolymorphicStateSet
  114. StandardSeqMatrix
  115. StandardSeqs
  116. StandardState
  117. StandardStates
  118. StandardUncertainStateSet
  119. StateSet
  120. Taxa
  121. TaxaLinked
  122. Taxon
  123. TaxonLinked
  124. TaxonSet
  125. TreeAndNetworkSet
  126. TreeFloatEdge
  127. TreeFloatRootEdge
  128. TreeIntEdge
  129. TreeIntRootEdge
  130. TreeNode
  131. Trees

elements

  1. AAChar_meta
  2. AAFormat_char
  3. AAFormat_set
  4. AAFormat_states
  5. AAMatrixObsRow_cell
  6. AAMatrixObsRow_meta
  7. AAMatrixObsRow_set
  8. AAMatrixSeqRow_meta
  9. AAMatrixSeqRow_seq
  10. AAObsMatrix_row
  11. AAObsMatrix_set
  12. AAObs_meta
  13. AAPolymorphicStateSet_member
  14. AAPolymorphicStateSet_uncertain_state_set
  15. AASeqMatrix_row
  16. AASeqMatrix_set
  17. AAStates_meta
  18. AAStates_polymorphic_state_set
  19. AAStates_set
  20. AAStates_state
  21. AAStates_uncertain_state_set
  22. AAUncertainStateSet_member
  23. AbstractBlock_format
  24. AbstractCells_matrix
  25. AbstractFormat_char
  26. AbstractFormat_set
  27. AbstractFormat_states
  28. AbstractNetwork_edge
  29. AbstractNetwork_node
  30. AbstractNetwork_set
  31. AbstractObsMatrix_row
  32. AbstractObsMatrix_set
  33. AbstractObsRow_cell
  34. AbstractObsRow_set
  35. AbstractPolymorphicStateSet_uncertain_state_set
  36. AbstractSeqMatrix_row
  37. AbstractSeqMatrix_set
  38. AbstractSeqRow_seq
  39. AbstractSeqs_matrix
  40. AbstractStates_polymorphic_state_set
  41. AbstractStates_set
  42. AbstractStates_state
  43. AbstractStates_uncertain_state_set
  44. AbstractTree_edge
  45. AbstractTree_node
  46. AbstractTree_rootedge
  47. AbstractTree_set
  48. AbstractTrees_network
  49. AbstractTrees_set
  50. AbstractTrees_tree
  51. AbstractUncertainStateSet_member
  52. Annotated_meta
  53. ContinuousCells_format
  54. ContinuousCells_matrix
  55. ContinuousCells_meta
  56. ContinuousChar_meta
  57. ContinuousFormat_char
  58. ContinuousFormat_set
  59. ContinuousMatrixObsRow_cell
  60. ContinuousMatrixObsRow_meta
  61. ContinuousMatrixObsRow_set
  62. ContinuousMatrixSeqRow_meta
  63. ContinuousMatrixSeqRow_seq
  64. ContinuousObsMatrix_row
  65. ContinuousObsMatrix_set
  66. ContinuousObs_meta
  67. ContinuousSeqMatrix_row
  68. ContinuousSeqMatrix_set
  69. ContinuousSeqs_format
  70. ContinuousSeqs_matrix
  71. ContinuousSeqs_meta
  72. DNAChar_meta
  73. DNAFormat_char
  74. DNAFormat_set
  75. DNAFormat_states
  76. DNAMatrixObsRow_cell
  77. DNAMatrixObsRow_meta
  78. DNAMatrixObsRow_set
  79. DNAMatrixSeqRow_meta
  80. DNAMatrixSeqRow_seq
  81. DNAObsMatrix_row
  82. DNAObsMatrix_set
  83. DNAObs_meta
  84. DNAPolymorphicStateSet_member
  85. DNAPolymorphicStateSet_uncertain_state_set
  86. DNASeqMatrix_row
  87. DNASeqMatrix_set
  88. DNAStates_meta
  89. DNAStates_polymorphic_state_set
  90. DNAStates_set
  91. DNAStates_state
  92. DNAStates_uncertain_state_set
  93. DNAUncertainStateSet_member
  94. DnaCells_format
  95. DnaCells_matrix
  96. DnaCells_meta
  97. DnaSeqs_format
  98. DnaSeqs_matrix
  99. DnaSeqs_meta
  100. FloatNetwork_edge
  101. FloatNetwork_node
  102. FloatNetwork_set
  103. FloatTree_edge
  104. FloatTree_meta
  105. FloatTree_node
  106. FloatTree_rootedge
  107. FloatTree_set
  108. IntNetwork_edge
  109. IntNetwork_node
  110. IntNetwork_set
  111. IntTree_edge
  112. IntTree_meta
  113. IntTree_node
  114. IntTree_rootedge
  115. IntTree_set
  116. NetworkFloatEdge_meta
  117. NetworkIntEdge_meta
  118. NetworkNode_meta
  119. Nexml_characters
  120. Nexml_otus
  121. Nexml_trees
  122. ProteinCells_format
  123. ProteinCells_matrix
  124. ProteinCells_meta
  125. ProteinSeqs_format
  126. ProteinSeqs_matrix
  127. ProteinSeqs_meta
  128. RNAChar_meta
  129. RNAFormat_char
  130. RNAFormat_set
  131. RNAFormat_states
  132. RNAMatrixObsRow_cell
  133. RNAMatrixObsRow_meta
  134. RNAMatrixObsRow_set
  135. RNAMatrixSeqRow_meta
  136. RNAMatrixSeqRow_seq
  137. RNAObsMatrix_row
  138. RNAObsMatrix_set
  139. RNAObs_meta
  140. RNAPolymorphicStateSet_member
  141. RNAPolymorphicStateSet_uncertain_state_set
  142. RNASeqMatrix_row
  143. RNASeqMatrix_set
  144. RNAStates_meta
  145. RNAStates_polymorphic_state_set
  146. RNAStates_set
  147. RNAStates_state
  148. RNAStates_uncertain_state_set
  149. RNAUncertainStateSet_member
  150. ResourceMeta_meta
  151. RestrictionCells_format
  152. RestrictionCells_matrix
  153. RestrictionCells_meta
  154. RestrictionChar_meta
  155. RestrictionFormat_char
  156. RestrictionFormat_set
  157. RestrictionFormat_states
  158. RestrictionMatrixObsRow_cell
  159. RestrictionMatrixObsRow_meta
  160. RestrictionMatrixObsRow_set
  161. RestrictionMatrixSeqRow_meta
  162. RestrictionMatrixSeqRow_seq
  163. RestrictionObsMatrix_row
  164. RestrictionObsMatrix_set
  165. RestrictionObs_meta
  166. RestrictionSeqMatrix_row
  167. RestrictionSeqMatrix_set
  168. RestrictionSeqs_format
  169. RestrictionSeqs_matrix
  170. RestrictionSeqs_meta
  171. RestrictionStates_meta
  172. RestrictionStates_set
  173. RestrictionStates_state
  174. RnaCells_format
  175. RnaCells_matrix
  176. RnaCells_meta
  177. RnaSeqs_format
  178. RnaSeqs_matrix
  179. RnaSeqs_meta
  180. StandardCells_format
  181. StandardCells_matrix
  182. StandardCells_meta
  183. StandardChar_meta
  184. StandardFormat_char
  185. StandardFormat_set
  186. StandardFormat_states
  187. StandardMatrixObsRow_cell
  188. StandardMatrixObsRow_meta
  189. StandardMatrixObsRow_set
  190. StandardMatrixSeqRow_meta
  191. StandardMatrixSeqRow_seq
  192. StandardObsMatrix_row
  193. StandardObsMatrix_set
  194. StandardObs_meta
  195. StandardPolymorphicStateSet_member
  196. StandardPolymorphicStateSet_uncertain_state_set
  197. StandardSeqMatrix_row
  198. StandardSeqMatrix_set
  199. StandardSeqs_format
  200. StandardSeqs_matrix
  201. StandardSeqs_meta
  202. StandardState_meta
  203. StandardStates_meta
  204. StandardStates_polymorphic_state_set
  205. StandardStates_set
  206. StandardStates_state
  207. StandardStates_uncertain_state_set
  208. StandardUncertainStateSet_member
  209. Taxa_otu
  210. Taxa_set
  211. TreeFloatEdge_meta
  212. TreeFloatRootEdge_meta
  213. TreeIntEdge_meta
  214. TreeIntRootEdge_meta
  215. TreeNode_meta
  216. Trees_network
  217. Trees_set
  218. Trees_tree
  219. attrExtensions
  220. nexml_ns.nexml.org_2009_nexml

schemas

  1. abstract.xsd
  2. abstractcharacters.xsd
  3. abstracttrees.xsd
  4. annotations.xsd
  5. characters.xsd
  6. continuous.xsd
  7. dna.xsd
  8. network.xsd
  9. nexml.xsd
  10. protein.xsd
  11. restriction.xsd
  12. rna.xsd
  13. sawsdl.xsd
  14. sets.xsd
  15. standard.xsd
  16. taxa.xsd
  17. tree.xsd
  18. trees.xsd
  19. xhtml-datatypes-1.xsd
  20. xlink.xsd
  21. xml.xsd

simpleTypes

  1. AASeq
  2. AAToken
  3. AbstractSeq
  4. AbstractSymbol
  5. AbstractTokenList
  6. CDATA
  7. CURIE
  8. CURIEs
  9. Character
  10. Charset_ns.w3.org_1999_xhtml_datatypes__Charset
  11. Charsets
  12. CodonPosition
  13. Color
  14. ContentType
  15. ContentTypes
  16. ContinuousSeq
  17. ContinuousToken
  18. DNASeq
  19. DNAToken
  20. Datetime
  21. FPI
  22. FrameTarget
  23. LanguageCode
  24. LanguageCodes
  25. Length
  26. LinkTypes
  27. MSTokenLength
  28. MediaDesc
  29. MultiLength
  30. MultiLengths
  31. Nexml1_0
  32. Number
  33. Pixels
  34. RNASeq
  35. RNAToken
  36. RestrictionSeq
  37. RestrictionToken
  38. SafeCURIE
  39. SafeCURIEs
  40. Script
  41. StandardSeq
  42. StandardToken
  43. Text
  44. URI
  45. URIorSafeCURIE
  46. URIorSafeCURIEs
  47. URIs
  48. listOfAnyURI