reactionStepList

<h:div class="summary">A container for one or more related reactionSteps.</h:div>
<h:div class="description">
  <h:p>
    <h:tt>reactionStepList</h:tt>is always contained within reactionScheme and is designed to manage "sub-reactions" which have close relationships. These will often involve reactions which, taken together, describe a higher level reaction or reaction type. Examples are:
    <h:ul>
      <h:li>biochemical pathways</h:li>
      <h:li>synthetic reaction schemes</h:li>
      <h:li>multi-step reactions</h:li>
      <h:li>parallel and/or coupled reactions</h:li>
    </h:ul>. A reactionStepList contains reactionSteps (each of which contains reactions and/or reactionSchemes (e.g. where part of the process is known in greater detail)). It may not directly contain child reactionStepLists.</h:p>
  <h:p>The child reactionSteps can have attributes such as yield and ratio which describe the relationship of the component steps.</h:p>
  <h:p>Guidance on use:
    <h:ul>
      <h:li>reactionScheme describes a complex of reactions with metadata, one (or more) overall reactions and a reactionStepList with the overall component reactions.</h:li>
      <h:li>reactionStepList aggregates and structures the individual subreactions.</h:li>
      <h:li>reactionList is a container for reactions and reactionSchemes with no semantics (e.g. a book or database of selected reactions).</h:li>
    </h:ul>
  </h:p>
</h:div>
<h:div class="example" href="reactionStepList1.xml"/>
<h:div class="example" href="reactionStepList3.xml"/>

Element Information

Model

anyCml | ANY element from ANY namespace OTHER than 'http://www.xml-cml.org/schema' | ANY element from LOCAL namespace 'No Namespace'
Children: anyCml

Attributes

QName Type Fixed Default Use Inheritable Annotation
convention namespaceRefType optional
<h:div class="summary">A reference to a convention.</h:div>
<h:div class="description">There is no controlled vocabulary for conventions, but the author must ensure that the semantics are openly available and that there are mechanisms for implementation. The convention is inherited by all the subelements, so that a convention for
  <h:tt>molecule</h:tt>would by default extend to its
  <h:tt>bond</h:tt>and
  <h:tt>atom</h:tt>children. This can be overwritten if necessary by an explicit
  <h:tt>convention</h:tt>.
  <h:p>It may be useful to create conventions with namespaces (e.g.
    <h:tt>iupac:name</h:tt>). Use of
    <h:tt>convention</h:tt>will normally require non-STMML semantics, and should be used with caution. We would expect that conventions prefixed with "ISO" would be useful, such as ISO8601 for dateTimes.</h:p>
  <h:p>There is no default, but the conventions of STMML or the related language (e.g. CML) will be assumed.</h:p>
</h:div>
<h:div class="example" id="ex" href="convGroup1.xml"/>
dictRef namespaceRefType optional
<h:div class="summary">A reference to a dictionary entry.</h:div>
<h:div class="description">Elements in data instances such as _scalar_ may have a
  <h:tt>dictRef</h:tt>attribute to point to an entry in a dictionary. To avoid excessive use of (mutable) filenames and URIs we recommend a namespace prefix, mapped to a namespace URI in the normal manner. In this case, of course, the namespace URI must point to a real XML doc containing _entry_ elements and validated against STMML Schema.
  <h:p>Where there is concern about the dictionary becoming separated from the doc the dictionary entries can be physically included as part of the data instance and the normal XPointer addressing mechanism can be used.</h:p>
  <h:p>This attribute can also be used on _dictionary_ elements to define the namespace prefix</h:p>
</h:div>
<h:div class="example" href="dictRefGroup1.xml"/>
format reactionFormatType optional
<h:div class="summary">Format of the reaction component.</h:div>
<h:div class="description">Indicates how the components of reactionScheme, reactionStepList, etc. should be processed. No controlled vocabulary. One example is format="cmlSnap" asserts that the processor can assume that the reactants and products can be rendered using the CMLSnap design. Note that the reaction can be interpreted without reference to the format, which is primarily a processing instruction.</h:div>
id idType optional
<h:div class="summary">A unique ID for an element.</h:div>
<h:div class="description">Id is used for machine identification of elements and in general should not have application semantics. It is similar to the XML ID type as containing only alphanumerics, '_', ',' and '-' and and must start with an alphabetic character. Ids are case sensitive. Ids should be unique within local scope, thus all atoms within a molecule should have unique ids, but separated molecules within a doc (such as a published article) might have identical ids. Software should be able to search local scope (e.g. all atoms within a molecule). However this is under constant review.</h:div>
ref refType optional
<h:div class="summary">A reference to an element of given type.</h:div>
<h:div class="description">
  <h:tt>ref</h:tt>modifies an element into a reference to an existing element of that type within the doc. This is similar to a pointer and it can be thought of a strongly typed hyperlink. It may also be used for "subclassing" or "overriding" elements.
  <br xmlns=""/>When referring to an element most of the "data" such as attribute values and element content will be on the full instantiated element. Therefore ref (and possibly id) will normally be the only attributes on the pointing element. However there may be some attributes (title, count, etc.) which have useful semantics, but these are element-specific</h:div>
<h:div class="example" href="refGroup1.xml"/>
title xsd:string optional
<h:div class="summary">A title on an element.</h:div>
<h:div class="description">No controlled value.</h:div>
<h:div class="example" href="title1.xml"/>
type reactionStepListTypeType consecutive optional
<h:div class="summary">The sequence of steps in a reactionStepList.</h:div>
<h:div class="description">By default the reactions in a reactionStepList are assumed to take place in sequence (e.g. one or more products of reaction n are used in reaction n+1 or later. However there are cases where it is known that reactions take place in parallel (e.g. if there is no overlap of molecular identities). Alternatively there are points at which there are two or more competing reactions which may depend on conditions or concentrations. A small semi-controlled vocabulary is suggested.</h:div>
<h:div>The semantic of these are not fully explored, but we suggest that consecutive and simultaneous should be the first to be supported</h:div>
Wildcard: ANY attribute from ANY namespace OTHER than 'http://www.xml-cml.org/schema'

Source

<xsd:element name="reactionStepList" id="el.reactionStepList" substitutionGroup="anyCml">
  <xsd:annotation>
    <xsd:documentation>
      <h:div class="summary">A container for one or more related reactionSteps.</h:div>
      <h:div class="description">
        <h:p>
          <h:tt>reactionStepList</h:tt>is always contained within reactionScheme and is designed to manage "sub-reactions" which have close relationships. These will often involve reactions which, taken together, describe a higher level reaction or reaction type. Examples are:
          <h:ul>
            <h:li>biochemical pathways</h:li>
            <h:li>synthetic reaction schemes</h:li>
            <h:li>multi-step reactions</h:li>
            <h:li>parallel and/or coupled reactions</h:li>
          </h:ul>. A reactionStepList contains reactionSteps (each of which contains reactions and/or reactionSchemes (e.g. where part of the process is known in greater detail)). It may not directly contain child reactionStepLists.</h:p>
        <h:p>The child reactionSteps can have attributes such as yield and ratio which describe the relationship of the component steps.</h:p>
        <h:p>Guidance on use:
          <h:ul>
            <h:li>reactionScheme describes a complex of reactions with metadata, one (or more) overall reactions and a reactionStepList with the overall component reactions.</h:li>
            <h:li>reactionStepList aggregates and structures the individual subreactions.</h:li>
            <h:li>reactionList is a container for reactions and reactionSchemes with no semantics (e.g. a book or database of selected reactions).</h:li>
          </h:ul>
        </h:p>
      </h:div>
      <h:div class="example" href="reactionStepList1.xml"/>
      <h:div class="example" href="reactionStepList3.xml"/>
    </xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:annotation>
      <xsd:documentation>
        <h:div>
          <h:p>The
            <h:tt>name</h:tt>applies to the overall schema of reactions.
            <h:tt>label</h:tt>is for additional textual information and classification.
            <h:tt>reactionStepList</h:tt>normally contains
            <h:tt>reactionStep</h:tt>s.</h:p>
        </h:div>
      </xsd:documentation>
    </xsd:annotation>
    <xsd:choice minOccurs="0" maxOccurs="unbounded">
      <xsd:element ref="anyCml"/>
      <xsd:any namespace="##other" processContents="lax"/>
      <xsd:any namespace="##local" processContents="lax"/>
    </xsd:choice>
    <xsd:attributeGroup ref="dictRef"/>
    <xsd:attributeGroup ref="convention"/>
    <xsd:attributeGroup ref="title"/>
    <xsd:attributeGroup ref="id"/>
    <xsd:attributeGroup ref="ref"/>
    <xsd:attributeGroup ref="reactionStepListType"/>
    <xsd:attributeGroup ref="reactionFormat"/>
    <xsd:anyAttribute namespace="##other" processContents="lax"/>
  </xsd:complexType>
</xsd:element>

Sample